Analysis of interatomic Contacts of Structural Units in PDB entry:
6F57


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F57 entry

There are 10 chains in PDB entry 6F57 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 628VAL 912
B
 GLN 188SER 379
C
 THR 181PHE 378
D
 LYS 630VAL 912
E
 A 403 G 412
F
 C 423 G 426
F
 G 428 T 432
G
 A 403 G 412
H
 C 423 G 426
H
 G 428 T 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 6F57. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
644 653Right-handed alpha
Helix 2
AA2
A
666 677Right-handed alpha
Helix 3
AA3
A
686 690Right-handed 310
Helix 4
AA4
A
691 698Right-handed alpha
Helix 5
AA5
A
729 742Right-handed alpha
Helix 6
AA6
A
762 773Right-handed alpha
Helix 7
AA7
A
783 785Right-handed 310
Helix 8
AA8
A
814 819Right-handed alpha
Helix 9
AA9
A
836 840Right-handed 310
Helix 10
AB1
A
860 869Right-handed alpha
Helix 11
AB2
A
881 891Right-handed alpha
Helix 12
AB3
A
894 903Right-handed alpha
Helix 13
AB4
A
904 908Right-handed 310
Helix 14
AB5
B
199 206Right-handed alpha
Helix 15
AB6
B
228 234Right-handed alpha
Helix 16
AB7
B
255 271Right-handed alpha
Helix 17
AB8
B
291 302Right-handed alpha
Helix 18
AB9
B
362 369Right-handed alpha
Helix 19
AC1
B
370 374Right-handed 310
Helix 20
AC2
C
183 187Right-handed 310
Helix 21
AC3
C
199 207Right-handed alpha
Helix 22
AC4
C
228 234Right-handed alpha
Helix 23
AC5
C
255 271Right-handed alpha
Helix 24
AC6
C
291 303Right-handed alpha
Helix 25
AC7
C
364 369Right-handed alpha
Helix 26
AC8
C
370 374Right-handed 310
Helix 27
AC9
D
644 653Right-handed alpha
Helix 28
AD1
D
666 677Right-handed alpha
Helix 29
AD2
D
686 690Right-handed 310
Helix 30
AD3
D
691 698Right-handed alpha
Helix 31
AD4
D
729 742Right-handed alpha
Helix 32
AD5
D
762 773Right-handed alpha
Helix 33
AD6
D
783 785Right-handed 310
Helix 34
AD7
D
814 819Right-handed alpha
Helix 35
AD8
D
836 840Right-handed 310
Helix 36
AD9
D
860 869Right-handed alpha
Helix 37
AE1
D
881 891Right-handed alpha
Helix 38
AE2
D
894 903Right-handed alpha
Helix 39
AE3
D
904 908Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6F57. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 684first strand
Strand 2
A
657 663parallel
Strand 3
A
634 639parallel
Strand 4
A
703 706parallel
Strand 5
A
752 758parallel
Strand 6
A
791 796anti-parallel
Strand 7
A
778 781anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 825first strand
Strand 2
A
850 852anti-parallel
Strand 3
A
855 857anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 221first strand
Strand 2
B
192 195parallel
Strand 3
B
240 244parallel
Strand 4
B
281 286parallel
Strand 5
B
321 325anti-parallel
Strand 6
B
307 309anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
219 221first strand
Strand 2
C
192 195parallel
Strand 3
C
240 244parallel
Strand 4
C
281 286parallel
Strand 5
C
322 325anti-parallel
Strand 6
C
307 308anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
681 684first strand
Strand 2
D
657 663parallel
Strand 3
D
634 639parallel
Strand 4
D
703 706parallel
Strand 5
D
752 758parallel
Strand 6
D
791 796anti-parallel
Strand 7
D
778 781anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
824 825first strand
Strand 2
D
850 851anti-parallel
Strand 3
D
856 857anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il