Analysis of interatomic Contacts of Structural Units in PDB entry:
6F5D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F5D entry

There are 12 chains in PDB entry 6F5D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 20	VAL 560
B	PHE 22	VAL 560
C	PHE 22	VAL 560
D	ASP 8	MET 488
E	VAL 6	ARG 492
F	ALA 7	ALA 494
G	GLY 2	GLU 285
H	HIS 5	HIS 165
I	SER 1	TYR 66
J	ALA 6	VAL 169
K	ALA 6	VAL 167
L	ALA 6	GLU 170

There are157 helices in PDB entry 6F5D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	163	170	Right-handed alpha
Helix 2	AA2	A	187	206	Right-handed alpha
Helix 3	AA3	A	207	211	Right-handed 310
Helix 4	AA4	A	222	236	Right-handed alpha
Helix 5	AA5	A	238	240	Right-handed 310
Helix 6	AA6	A	252	273	Right-handed alpha
Helix 7	AA7	A	283	298	Right-handed alpha
Helix 8	AA8	A	303	307	Right-handed 310
Helix 9	AA9	A	308	309	Right-handed 310
Helix 10	AB1	A	310	321	Right-handed alpha
Helix 11	AB2	A	326	330	Right-handed 310
Helix 12	AB3	A	349	359	Right-handed alpha
Helix 13	AB4	A	366	373	Right-handed alpha
Helix 14	AB5	A	387	392	Right-handed alpha
Helix 15	AB6	A	393	416	Right-handed alpha
Helix 16	AB7	A	425	438	Right-handed alpha
Helix 17	AB8	A	445	459	Right-handed alpha
Helix 18	AB9	A	468	478	Right-handed alpha
Helix 19	AC1	A	497	499	Right-handed 310
Helix 20	AC2	A	500	508	Right-handed alpha
Helix 21	AC3	A	514	532	Right-handed alpha
Helix 22	AC4	A	535	540	Right-handed alpha
Helix 23	AC5	A	545	559	Right-handed alpha
Helix 24	AC6	B	163	170	Right-handed alpha
Helix 25	AC7	B	187	206	Right-handed alpha
Helix 26	AC8	B	207	211	Right-handed 310
Helix 27	AC9	B	222	236	Right-handed alpha
Helix 28	AD1	B	238	240	Right-handed 310
Helix 29	AD2	B	252	273	Right-handed alpha
Helix 30	AD3	B	283	298	Right-handed alpha
Helix 31	AD4	B	303	307	Right-handed 310
Helix 32	AD5	B	308	309	Right-handed 310
Helix 33	AD6	B	310	321	Right-handed alpha
Helix 34	AD7	B	326	330	Right-handed 310
Helix 35	AD8	B	349	359	Right-handed alpha
Helix 36	AD9	B	366	373	Right-handed alpha
Helix 37	AE1	B	387	392	Right-handed alpha
Helix 38	AE2	B	393	414	Right-handed alpha
Helix 39	AE3	B	425	438	Right-handed alpha
Helix 40	AE4	B	445	459	Right-handed alpha
Helix 41	AE5	B	468	478	Right-handed alpha
Helix 42	AE6	B	480	486	Right-handed alpha
Helix 43	AE7	B	497	499	Right-handed 310
Helix 44	AE8	B	500	508	Right-handed alpha
Helix 45	AE9	B	514	532	Right-handed alpha
Helix 46	AF1	B	533	538	Right-handed 310
Helix 47	AF2	B	542	559	Right-handed alpha
Helix 48	AF3	C	108	112	Right-handed 310
Helix 49	AF4	C	163	170	Right-handed alpha
Helix 50	AF5	C	187	206	Right-handed alpha
Helix 51	AF6	C	207	211	Right-handed 310
Helix 52	AF7	C	222	236	Right-handed alpha
Helix 53	AF8	C	238	240	Right-handed 310
Helix 54	AF9	C	252	273	Right-handed alpha
Helix 55	AG1	C	283	298	Right-handed alpha
Helix 56	AG2	C	303	307	Right-handed 310
Helix 57	AG3	C	308	309	Right-handed 310
Helix 58	AG4	C	310	321	Right-handed alpha
Helix 59	AG5	C	326	330	Right-handed 310
Helix 60	AG6	C	349	359	Right-handed alpha
Helix 61	AG7	C	366	373	Right-handed alpha
Helix 62	AG8	C	387	392	Right-handed alpha
Helix 63	AG9	C	393	416	Right-handed alpha
Helix 64	AH1	C	425	438	Right-handed alpha
Helix 65	AH2	C	445	459	Right-handed alpha
Helix 66	AH3	C	468	478	Right-handed alpha
Helix 67	AH4	C	480	486	Right-handed alpha
Helix 68	AH5	C	497	499	Right-handed 310
Helix 69	AH6	C	500	508	Right-handed alpha
Helix 70	AH7	C	514	532	Right-handed alpha
Helix 71	AH8	C	534	540	Right-handed alpha
Helix 72	AH9	C	545	559	Right-handed alpha
Helix 73	AI1	D	143	150	Right-handed alpha
Helix 74	AI2	D	167	179	Right-handed alpha
Helix 75	AI3	D	195	209	Right-handed alpha
Helix 76	AI4	D	230	251	Right-handed alpha
Helix 77	AI5	D	263	277	Right-handed alpha
Helix 78	AI6	D	282	286	Right-handed 310
Helix 79	AI7	D	289	299	Right-handed alpha
Helix 80	AI8	D	318	321	Right-handed 310
Helix 81	AI9	D	324	332	Right-handed alpha
Helix 82	AJ1	D	341	348	Right-handed alpha
Helix 83	AJ2	D	369	396	Right-handed alpha
Helix 84	AJ3	D	402	419	Right-handed alpha
Helix 85	AJ4	D	426	431	Right-handed alpha
Helix 86	AJ5	D	438	452	Right-handed alpha
Helix 87	AJ6	D	458	463	Right-handed alpha
Helix 88	AJ7	D	467	488	Right-handed alpha
Helix 89	AJ8	E	143	150	Right-handed alpha
Helix 90	AJ9	E	167	183	Right-handed alpha
Helix 91	AK1	E	195	209	Right-handed alpha
Helix 92	AK2	E	230	251	Right-handed alpha
Helix 93	AK3	E	263	277	Right-handed alpha
Helix 94	AK4	E	282	286	Right-handed 310
Helix 95	AK5	E	289	299	Right-handed alpha
Helix 96	AK6	E	317	321	Right-handed 310
Helix 97	AK7	E	324	332	Right-handed alpha
Helix 98	AK8	E	341	348	Right-handed alpha
Helix 99	AK9	E	369	396	Right-handed alpha
Helix 100	AL1	E	402	419	Right-handed alpha
Helix 101	AL2	E	426	431	Right-handed alpha
Helix 102	AL3	E	438	452	Right-handed alpha
Helix 103	AL4	E	467	490	Right-handed alpha
Helix 104	AL5	F	143	150	Right-handed alpha
Helix 105	AL6	F	167	179	Right-handed alpha
Helix 106	AL7	F	195	209	Right-handed alpha
Helix 107	AL8	F	230	251	Right-handed alpha
Helix 108	AL9	F	263	277	Right-handed alpha
Helix 109	AM1	F	282	286	Right-handed 310
Helix 110	AM2	F	289	299	Right-handed alpha
Helix 111	AM3	F	318	321	Right-handed 310
Helix 112	AM4	F	324	332	Right-handed alpha
Helix 113	AM5	F	341	348	Right-handed alpha
Helix 114	AM6	F	369	396	Right-handed alpha
Helix 115	AM7	F	402	419	Right-handed alpha
Helix 116	AM8	F	426	431	Right-handed alpha
Helix 117	AM9	F	438	452	Right-handed alpha
Helix 118	AN1	F	458	463	Right-handed alpha
Helix 119	AN2	F	467	490	Right-handed alpha
Helix 120	AN3	G	3	37	Right-handed alpha
Helix 121	AN4	G	43	46	Right-handed 310
Helix 122	AN5	G	47	54	Right-handed alpha
Helix 123	AN6	G	85	97	Right-handed alpha
Helix 124	AN7	G	107	118	Right-handed alpha
Helix 125	AN8	G	135	147	Right-handed alpha
Helix 126	AN9	G	178	191	Right-handed alpha
Helix 127	AO1	G	198	207	Right-handed alpha
Helix 128	AO2	G	209	284	Right-handed alpha
Helix 129	AO3	H	121	138	Right-handed alpha
Helix 130	AO4	H	141	163	Right-handed alpha
Helix 131	AO5	I	10	25	Right-handed alpha
Helix 132	AO6	I	27	30	Right-handed 310
Helix 133	AO7	I	31	36	Right-handed alpha
Helix 134	AO8	J	20	29	Right-handed alpha
Helix 135	AO9	J	33	46	Right-handed alpha
Helix 136	AP1	J	51	65	Right-handed alpha
Helix 137	AP2	J	77	91	Right-handed alpha
Helix 138	AP3	J	98	113	Right-handed alpha
Helix 139	AP4	J	114	128	Right-handed alpha
Helix 140	AP5	J	134	151	Right-handed alpha
Helix 141	AP6	J	156	161	Right-handed alpha
Helix 142	AP7	K	20	29	Right-handed alpha
Helix 143	AP8	K	33	46	Right-handed alpha
Helix 144	AP9	K	51	65	Right-handed alpha
Helix 145	AQ1	K	77	91	Right-handed alpha
Helix 146	AQ2	K	98	113	Right-handed alpha
Helix 147	AQ3	K	114	128	Right-handed alpha
Helix 148	AQ4	K	135	151	Right-handed alpha
Helix 149	AQ5	K	155	160	Right-handed alpha
Helix 150	AQ6	L	20	29	Right-handed alpha
Helix 151	AQ7	L	33	46	Right-handed alpha
Helix 152	AQ8	L	51	65	Right-handed alpha
Helix 153	AQ9	L	77	91	Right-handed alpha
Helix 154	AR1	L	98	113	Right-handed alpha
Helix 155	AR2	L	114	127	Right-handed alpha
Helix 156	AR3	L	134	151	Right-handed alpha
Helix 157	AR4	L	156	161	Right-handed alpha

There are 27 sheets in PDB entry 6F5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	73	first strand
Strand 2	A	55	58	anti-parallel
Strand 3	A	95	98	anti-parallel
Strand 4	A	26	34	anti-parallel
Strand 5	A	38	43	anti-parallel
Strand 6	A	79	83	anti-parallel
Strand 7	A	66	73	anti-parallel
Strand 8	E	13	20	anti-parallel
Strand 9	E	80	83	anti-parallel
Strand 10	E	38	41	anti-parallel
Strand 11	E	52	58	anti-parallel
Strand 12	E	63	68	anti-parallel
Strand 13	E	23	28	anti-parallel
Strand 14	E	13	20	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	139	141	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	115	116	anti-parallel
Strand 3	A	242	247	parallel
Strand 4	A	213	219	parallel
Strand 5	A	276	282	parallel
Strand 6	A	333	341	parallel
Strand 7	A	179	182	parallel
Strand 8	A	361	365	parallel
Strand 9	A	384	385	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	172	173	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	34	first strand
Strand 2	B	38	43	anti-parallel
Strand 3	B	79	83	anti-parallel
Strand 4	B	66	73	anti-parallel
Strand 5	B	55	58	anti-parallel
Strand 6	B	95	98	anti-parallel
Strand 7	B	26	34	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	139	141	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	115	116	anti-parallel
Strand 3	B	242	247	parallel
Strand 4	B	213	219	parallel
Strand 5	B	276	282	parallel
Strand 6	B	333	341	parallel
Strand 7	B	179	182	parallel
Strand 8	B	361	365	parallel
Strand 9	B	384	385	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	172	173	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	34	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	C	79	83	anti-parallel
Strand 4	C	66	73	anti-parallel
Strand 5	C	55	58	anti-parallel
Strand 6	C	95	98	anti-parallel
Strand 7	C	26	34	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	139	141	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	C	115	116	anti-parallel
Strand 3	C	242	247	parallel
Strand 4	C	213	219	parallel
Strand 5	C	276	282	parallel
Strand 6	C	333	341	parallel
Strand 7	C	179	182	parallel
Strand 8	C	361	365	parallel
Strand 9	C	384	385	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	172	173	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	20	first strand
Strand 2	D	23	28	anti-parallel
Strand 3	D	63	68	anti-parallel
Strand 4	D	52	58	anti-parallel
Strand 5	D	38	41	anti-parallel
Strand 6	D	80	83	anti-parallel
Strand 7	D	13	20	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	119	121	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	221	225	parallel
Strand 3	D	187	192	parallel
Strand 4	D	255	260	parallel
Strand 5	D	308	316	parallel
Strand 6	D	158	162	parallel
Strand 7	D	336	340	parallel
Strand 8	D	359	360	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	91	first strand
Strand 2	E	119	121	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	101	first strand
Strand 2	E	221	225	parallel
Strand 3	E	187	192	parallel
Strand 4	E	255	260	parallel
Strand 5	E	308	313	parallel
Strand 6	E	157	161	parallel
Strand 7	E	336	339	parallel
Strand 8	E	359	360	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	20	first strand
Strand 2	F	23	28	anti-parallel
Strand 3	F	63	68	anti-parallel
Strand 4	F	52	58	anti-parallel
Strand 5	F	38	41	anti-parallel
Strand 6	F	80	83	anti-parallel
Strand 7	F	13	20	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	91	first strand
Strand 2	F	119	121	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	101	first strand
Strand 2	F	221	225	parallel
Strand 3	F	187	192	parallel
Strand 4	F	255	260	parallel
Strand 5	F	308	316	parallel
Strand 6	F	158	162	parallel
Strand 7	F	336	340	parallel
Strand 8	F	359	360	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	102	103	first strand
Strand 2	G	71	72	parallel
Strand 3	G	155	163	parallel
Strand 4	G	169	177	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	128	first strand
Strand 2	I	42	45	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	35	first strand
Strand 2	H	48	50	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	43	first strand
Strand 2	H	38	39	anti-parallel
Strand 3	H	110	111	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	52	54	anti-parallel
Strand 3	H	79	83	anti-parallel
Strand 4	H	89	94	anti-parallel
Strand 5	H	114	116	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	74	first strand
Strand 2	H	98	101	anti-parallel
Strand 3	H	107	108	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	47	48	first strand
Strand 2	I	52	53	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F5D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F5D