Analysis of interatomic Contacts of Structural Units in PDB entry:
6F5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F5E entry

There are 2 chains in PDB entry 6F5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11ASN 325
B
 ASP 7LYS 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6F5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
26 37Right-handed alpha
Helix 3
AA3
A
49 58Right-handed alpha
Helix 4
AA4
A
59 69Right-handed alpha
Helix 5
AA5
A
82 91Right-handed alpha
Helix 6
AA6
A
92 102Right-handed alpha
Helix 7
AA7
A
115 123Right-handed alpha
Helix 8
AA8
A
125 135Right-handed alpha
Helix 9
AA9
A
148 156Right-handed alpha
Helix 10
AB1
A
158 181Right-handed alpha
Helix 11
AB2
A
182 192Right-handed alpha
Helix 12
AB3
A
205 214Right-handed alpha
Helix 13
AB4
A
215 225Right-handed alpha
Helix 14
AB5
A
238 247Right-handed alpha
Helix 15
AB6
A
248 258Right-handed alpha
Helix 16
AB7
A
271 280Right-handed alpha
Helix 17
AB8
A
281 291Right-handed alpha
Helix 18
AB9
A
304 312Right-handed alpha
Helix 19
AC1
A
314 325Right-handed alpha
Helix 20
AC2
B
60 62Right-handed 310
Helix 21
AC3
B
63 80Right-handed alpha
Helix 22
AC4
B
115 119Right-handed alpha
Helix 23
AC5
B
124 145Right-handed alpha
Helix 24
AC6
B
153 155Right-handed 310
Helix 25
AC7
B
188 192Right-handed 310
Helix 26
AC8
B
193 198Right-handed alpha
Helix 27
AC9
B
205 221Right-handed alpha
Helix 28
AD1
B
229 242Right-handed alpha
Helix 29
AD2
B
245 250Right-handed alpha
Helix 30
AD3
B
253 261Right-handed alpha
Helix 31
AD4
B
270 275Right-handed alpha
Helix 32
AD5
B
284 302Right-handed alpha
Helix 33
AD6
B
311 317Right-handed alpha
Helix 34
AD7
B
321 325Right-handed 310
Helix 35
AD8
B
326 331Right-handed alpha
Helix 36
AD9
B
348 361Right-handed alpha
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There are 3 sheets in PDB entry 6F5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 15first strand
Strand 2
B
18 23anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 31first strand
Strand 2
B
40 45anti-parallel
Strand 3
B
50 58anti-parallel
Strand 4
B
103 109anti-parallel
Strand 5
B
88 92anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
157 159anti-parallel
Strand 3
B
165 167anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il