Analysis of interatomic Contacts of Structural Units in PDB entry:
6F5F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F5F entry

There are 8 chains in PDB entry 6F5F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 92	ASP 207
B	ALA 92	ASP 207
C	ALA 92	MET 206
D	ALA 92	GLN 205
E	C 1	C 15
F	C 1	C 15
G	C 1	C 15
H	C 1	C 15

There are 8 helices in PDB entry 6F5F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	168	185	Right-handed alpha
Helix 2	AA2	A	190	194	Right-handed 310
Helix 3	AA3	B	168	185	Right-handed alpha
Helix 4	AA4	B	190	194	Right-handed 310
Helix 5	AA5	C	168	185	Right-handed alpha
Helix 6	AA6	C	190	194	Right-handed 310
Helix 7	AA7	D	168	185	Right-handed alpha
Helix 8	AA8	D	190	194	Right-handed 310

There are 12 sheets in PDB entry 6F5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	128	139	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	159	166	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	128	139	anti-parallel
Strand 3	A	116	123	anti-parallel
Strand 4	A	202	204	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	113	114	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	128	139	anti-parallel
Strand 3	B	145	153	anti-parallel
Strand 4	B	159	166	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	128	139	anti-parallel
Strand 3	B	116	123	anti-parallel
Strand 4	B	202	203	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	113	114	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand
Strand 2	C	128	139	anti-parallel
Strand 3	C	145	153	anti-parallel
Strand 4	C	159	166	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand
Strand 2	C	128	139	anti-parallel
Strand 3	C	116	123	anti-parallel
Strand 4	C	202	204	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	113	114	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	107	first strand
Strand 2	D	128	139	anti-parallel
Strand 3	D	145	153	anti-parallel
Strand 4	D	159	166	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	107	first strand
Strand 2	D	128	139	anti-parallel
Strand 3	D	116	123	anti-parallel
Strand 4	D	202	204	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	113	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F5F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F5F