Analysis of interatomic Contacts of Structural Units in PDB entry:
6F5J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F5J entry

There are 3 chains in PDB entry 6F5J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	VAL 253
B	ASP 2	ALA 251
C	ASN 2	LEU 398

There are 25 helices in PDB entry 6F5J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	27	Right-handed alpha
Helix 2	AA2	A	32	38	Right-handed alpha
Helix 3	AA3	A	81	87	Right-handed alpha
Helix 4	AA4	A	90	97	Right-handed alpha
Helix 5	AA5	A	192	196	Right-handed 310
Helix 6	AA6	A	211	216	Right-handed 310
Helix 7	AA7	A	246	248	Right-handed 310
Helix 8	AA8	B	42	48	Right-handed alpha
Helix 9	AA9	B	55	60	Right-handed alpha
Helix 10	AB1	B	85	95	Right-handed alpha
Helix 11	AB2	B	99	103	Right-handed 310
Helix 12	AB3	B	106	112	Right-handed alpha
Helix 13	AB4	B	143	150	Right-handed 310
Helix 14	AB5	B	154	159	Right-handed alpha
Helix 15	AB6	B	241	245	Right-handed 310
Helix 16	AB7	C	54	59	Right-handed alpha
Helix 17	AB8	C	105	113	Right-handed alpha
Helix 18	AB9	C	154	159	Right-handed alpha
Helix 19	AC1	C	195	199	Right-handed 310
Helix 20	AC2	C	279	283	Right-handed 310
Helix 21	AC3	C	316	320	Right-handed 310
Helix 22	AC4	C	347	352	Right-handed alpha
Helix 23	AC5	C	354	360	Right-handed alpha
Helix 24	AC6	C	366	371	Right-handed alpha
Helix 25	AC7	C	375	379	Right-handed 310

There are 14 sheets in PDB entry 6F5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	C	173	178	parallel
Strand 3	C	121	128	anti-parallel
Strand 4	C	223	232	anti-parallel
Strand 5	C	63	71	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	220	226	anti-parallel
Strand 3	A	106	111	anti-parallel
Strand 4	A	167	172	anti-parallel
Strand 5	C	31	32	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	61	65	anti-parallel
Strand 3	A	200	206	anti-parallel
Strand 4	A	120	124	anti-parallel
Strand 5	A	156	160	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	101	103	anti-parallel
Strand 3	A	232	233	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	C	246	247	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	23	26	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	70	first strand
Strand 2	B	223	231	anti-parallel
Strand 3	B	119	126	anti-parallel
Strand 4	B	173	178	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	203	214	anti-parallel
Strand 3	B	132	141	anti-parallel
Strand 4	B	164	167	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	114	116	anti-parallel
Strand 3	B	235	237	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	204	215	anti-parallel
Strand 3	C	134	143	anti-parallel
Strand 4	C	162	168	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	102	103	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	237	238	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	286	288	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	345	first strand
Strand 2	C	329	334	anti-parallel
Strand 3	C	308	314	anti-parallel
Strand 4	C	391	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F5J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F5J