Analysis of interatomic Contacts of Structural Units in PDB entry:
6F5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F5K entry

There are 2 chains in PDB entry 6F5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2LEU 97
A
 GLN 99LEU 559
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6F5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 106Right-handed 310
Helix 2
AA2
A
143 148Right-handed 310
Helix 3
AA3
A
179 190Right-handed alpha
Helix 4
AA4
A
293 297Right-handed 310
Helix 5
AA5
A
354 356Right-handed 310
Helix 6
AA6
A
387 394Right-handed alpha
Helix 7
AA7
A
400 403Right-handed 310
Helix 8
AA8
A
460 465Right-handed alpha
Helix 9
AA9
A
466 468Right-handed 310
Helix 10
AB1
A
505 511Right-handed alpha
Helix 11
AB2
A
520 528Right-handed alpha
Helix 12
AB3
A
529 547Right-handed alpha
Helix 13
AB4
A
548 550Right-handed 310
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There are 7 sheets in PDB entry 6F5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
17 18anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 60first strand
Strand 2
A
33 47anti-parallel
Strand 3
A
76 84parallel
Strand 4
A
121 128anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 72first strand
Strand 2
A
150 156parallel
Strand 3
A
133 139anti-parallel
Strand 4
A
92 95anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
165 175anti-parallel
Strand 3
A
224 231parallel
Strand 4
A
272 278anti-parallel
Strand 5
A
247 252anti-parallel
Strand 6
A
255 262anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
307 312parallel
Strand 3
A
285 291anti-parallel
Strand 4
A
238 242anti-parallel
Strand 5
A
265 267anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 375first strand
Strand 2
A
358 364anti-parallel
Strand 3
A
414 421parallel
Strand 4
A
486 492anti-parallel
Strand 5
A
440 445anti-parallel
Strand 6
A
474 476anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 408first strand
Strand 2
A
514 519parallel
Strand 3
A
497 503anti-parallel
Strand 4
A
431 435anti-parallel
Strand 5
A
478 481anti-parallel
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