Analysis of interatomic Contacts of Structural Units in PDB entry:
6F5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F5V entry

There are 4 chains in PDB entry 6F5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 24	ALA 424
B	VAL 21	ARG 423
C	SER 24	LEU 422
D	SER 20	LYS 103

There are 86 helices in PDB entry 6F5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	32	Right-handed alpha
Helix 2	AA2	A	37	49	Right-handed alpha
Helix 3	AA3	A	67	80	Right-handed alpha
Helix 4	AA4	A	91	107	Right-handed alpha
Helix 5	AA5	A	111	113	Right-handed 310
Helix 6	AA6	A	120	133	Right-handed alpha
Helix 7	AA7	A	147	156	Right-handed alpha
Helix 8	AA8	A	166	170	Right-handed 310
Helix 9	AA9	A	174	182	Right-handed alpha
Helix 10	AB1	A	203	215	Right-handed alpha
Helix 11	AB2	A	240	244	Right-handed 310
Helix 12	AB3	A	247	249	Right-handed 310
Helix 13	AB4	A	263	267	Right-handed 310
Helix 14	AB5	A	274	289	Right-handed alpha
Helix 15	AB6	A	293	305	Right-handed alpha
Helix 16	AB7	A	306	309	Right-handed 310
Helix 17	AB8	A	310	334	Right-handed alpha
Helix 18	AB9	A	354	357	Right-handed 310
Helix 19	AC1	A	369	382	Right-handed alpha
Helix 20	AC2	A	389	392	Right-handed 310
Helix 21	AC3	A	404	420	Right-handed alpha
Helix 22	AC4	A	421	423	Right-handed 310
Helix 23	AC5	B	26	31	Right-handed alpha
Helix 24	AC6	B	37	50	Right-handed alpha
Helix 25	AC7	B	67	80	Right-handed alpha
Helix 26	AC8	B	91	107	Right-handed alpha
Helix 27	AC9	B	111	113	Right-handed 310
Helix 28	AD1	B	120	133	Right-handed alpha
Helix 29	AD2	B	147	156	Right-handed alpha
Helix 30	AD3	B	166	170	Right-handed 310
Helix 31	AD4	B	174	182	Right-handed alpha
Helix 32	AD5	B	203	216	Right-handed alpha
Helix 33	AD6	B	240	244	Right-handed 310
Helix 34	AD7	B	247	249	Right-handed 310
Helix 35	AD8	B	263	267	Right-handed 310
Helix 36	AD9	B	274	289	Right-handed alpha
Helix 37	AE1	B	293	305	Right-handed alpha
Helix 38	AE2	B	306	309	Right-handed 310
Helix 39	AE3	B	310	334	Right-handed alpha
Helix 40	AE4	B	354	357	Right-handed 310
Helix 41	AE5	B	369	382	Right-handed alpha
Helix 42	AE6	B	389	392	Right-handed 310
Helix 43	AE7	B	404	420	Right-handed alpha
Helix 44	AE8	B	421	423	Right-handed 310
Helix 45	AE9	C	26	31	Right-handed alpha
Helix 46	AF1	C	37	50	Right-handed alpha
Helix 47	AF2	C	67	80	Right-handed alpha
Helix 48	AF3	C	91	107	Right-handed alpha
Helix 49	AF4	C	111	113	Right-handed 310
Helix 50	AF5	C	120	133	Right-handed alpha
Helix 51	AF6	C	147	156	Right-handed alpha
Helix 52	AF7	C	166	170	Right-handed 310
Helix 53	AF8	C	174	182	Right-handed alpha
Helix 54	AF9	C	203	215	Right-handed alpha
Helix 55	AG1	C	240	244	Right-handed 310
Helix 56	AG2	C	247	249	Right-handed 310
Helix 57	AG3	C	263	267	Right-handed 310
Helix 58	AG4	C	274	289	Right-handed alpha
Helix 59	AG5	C	293	305	Right-handed alpha
Helix 60	AG6	C	306	309	Right-handed 310
Helix 61	AG7	C	310	335	Right-handed alpha
Helix 62	AG8	C	354	357	Right-handed 310
Helix 63	AG9	C	369	382	Right-handed alpha
Helix 64	AH1	C	389	392	Right-handed 310
Helix 65	AH2	C	404	420	Right-handed alpha
Helix 66	AH3	D	26	32	Right-handed alpha
Helix 67	AH4	D	37	51	Right-handed alpha
Helix 68	AH5	D	67	80	Right-handed alpha
Helix 69	AH6	D	91	107	Right-handed alpha
Helix 70	AH7	D	111	113	Right-handed 310
Helix 71	AH8	D	120	133	Right-handed alpha
Helix 72	AH9	D	147	156	Right-handed alpha
Helix 73	AI1	D	166	170	Right-handed 310
Helix 74	AI2	D	174	180	Right-handed alpha
Helix 75	AI3	D	203	216	Right-handed alpha
Helix 76	AI4	D	240	244	Right-handed 310
Helix 77	AI5	D	247	249	Right-handed 310
Helix 78	AI6	D	263	267	Right-handed 310
Helix 79	AI7	D	274	289	Right-handed alpha
Helix 80	AI8	D	293	305	Right-handed alpha
Helix 81	AI9	D	306	309	Right-handed 310
Helix 82	AJ1	D	310	334	Right-handed alpha
Helix 83	AJ2	D	354	357	Right-handed 310
Helix 84	AJ3	D	369	382	Right-handed alpha
Helix 85	AJ4	D	389	392	Right-handed 310
Helix 86	AJ5	D	404	420	Right-handed alpha

There are 16 sheets in PDB entry 6F5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	383	384	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	269	272	anti-parallel
Strand 3	A	251	256	anti-parallel
Strand 4	A	221	225	parallel
Strand 5	A	186	192	parallel
Strand 6	A	138	143	parallel
Strand 7	A	159	164	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	396	400	anti-parallel
Strand 3	A	386	387	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	365	367	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	383	384	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	269	272	anti-parallel
Strand 3	B	251	256	anti-parallel
Strand 4	B	221	225	parallel
Strand 5	B	186	192	parallel
Strand 6	B	138	142	parallel
Strand 7	B	159	163	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	396	400	anti-parallel
Strand 3	B	386	387	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	365	367	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	383	384	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	118	first strand
Strand 2	C	269	272	anti-parallel
Strand 3	C	251	256	anti-parallel
Strand 4	C	221	225	parallel
Strand 5	C	186	192	parallel
Strand 6	C	138	143	parallel
Strand 7	C	159	164	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	352	first strand
Strand 2	C	396	400	anti-parallel
Strand 3	C	386	387	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	365	367	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	383	384	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	118	first strand
Strand 2	D	269	272	anti-parallel
Strand 3	D	251	256	anti-parallel
Strand 4	D	221	225	parallel
Strand 5	D	186	192	parallel
Strand 6	D	138	143	parallel
Strand 7	D	159	164	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	348	352	anti-parallel
Strand 3	D	396	400	anti-parallel
Strand 4	D	386	387	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	361	first strand
Strand 2	D	365	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F5V