Analysis of interatomic Contacts of Structural Units in PDB entry:
6F5Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F5Z entry

There are 4 chains in PDB entry 6F5Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 227
B
 SER 2HIS 231
C
 MET 1ARG 59
D
 MET 1MET 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6F5Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
14 34Right-handed alpha
Helix 3
AA3
A
50 61Right-handed alpha
Helix 4
AA4
A
71 81Right-handed alpha
Helix 5
AA5
A
112 116Right-handed 310
Helix 6
AA6
A
118 129Right-handed alpha
Helix 7
AA7
A
146 156Right-handed 310
Helix 8
AA8
A
164 175Right-handed alpha
Helix 9
AA9
A
194 198Right-handed 310
Helix 10
AB1
A
205 214Right-handed alpha
Helix 11
AB2
B
3 12Right-handed alpha
Helix 12
AB3
B
16 34Right-handed alpha
Helix 13
AB4
B
50 61Right-handed alpha
Helix 14
AB5
B
71 81Right-handed alpha
Helix 15
AB6
B
112 116Right-handed 310
Helix 16
AB7
B
118 129Right-handed alpha
Helix 17
AB8
B
146 156Right-handed 310
Helix 18
AB9
B
164 175Right-handed alpha
Helix 19
AC1
B
194 198Right-handed 310
Helix 20
AC2
B
205 215Right-handed alpha
Helix 21
AC3
C
2 9Right-handed 310
Helix 22
AC4
C
55 59Right-handed 310
Helix 23
AC5
D
2 9Right-handed 310
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There are 4 sheets in PDB entry 6F5Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
64 69parallel
Strand 3
A
41 45parallel
Strand 4
A
104 110parallel
Strand 5
A
130 140parallel
Strand 6
A
218 224anti-parallel
Strand 7
A
178 185anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
64 69parallel
Strand 3
B
41 45parallel
Strand 4
B
104 110parallel
Strand 5
B
130 140parallel
Strand 6
B
218 224anti-parallel
Strand 7
B
178 185anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 26first strand
Strand 2
C
29 37anti-parallel
Strand 3
C
43 47anti-parallel
Strand 4
C
50 51anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 24first strand
Strand 2
D
32 37anti-parallel
Strand 3
D
43 47anti-parallel
Strand 4
D
50 51anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il