Analysis of interatomic Contacts of Structural Units in PDB entry:
6F77

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F77 entry

There are 5 chains in PDB entry 6F77 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ARG 401
B	ALA 2	SER 239
B	ALA 241	ARG 401
C	ALA 2	ARG 401
D	ALA 2	TYR 128

There are119 helices in PDB entry 6F77. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	11	Right-handed 310
Helix 2	AA2	A	14	29	Right-handed alpha
Helix 3	AA3	A	46	60	Right-handed alpha
Helix 4	AA4	A	70	86	Right-handed alpha
Helix 5	AA5	A	90	92	Right-handed 310
Helix 6	AA6	A	98	110	Right-handed alpha
Helix 7	AA7	A	126	135	Right-handed alpha
Helix 8	AA8	A	145	149	Right-handed 310
Helix 9	AA9	A	153	161	Right-handed alpha
Helix 10	AB1	A	182	194	Right-handed alpha
Helix 11	AB2	A	219	225	Right-handed alpha
Helix 12	AB3	A	226	230	Right-handed 310
Helix 13	AB4	A	244	248	Right-handed 310
Helix 14	AB5	A	255	270	Right-handed alpha
Helix 15	AB6	A	274	287	Right-handed alpha
Helix 16	AB7	A	289	311	Right-handed alpha
Helix 17	AB8	A	331	335	Right-handed 310
Helix 18	AB9	A	347	360	Right-handed alpha
Helix 19	AC1	A	367	370	Right-handed 310
Helix 20	AC2	A	382	400	Right-handed alpha
Helix 21	AC3	B	5	11	Right-handed 310
Helix 22	AC4	B	14	29	Right-handed alpha
Helix 23	AC5	B	46	59	Right-handed alpha
Helix 24	AC6	B	70	86	Right-handed alpha
Helix 25	AC7	B	90	92	Right-handed 310
Helix 26	AC8	B	98	110	Right-handed alpha
Helix 27	AC9	B	126	135	Right-handed alpha
Helix 28	AD1	B	145	149	Right-handed 310
Helix 29	AD2	B	153	161	Right-handed alpha
Helix 30	AD3	B	182	194	Right-handed alpha
Helix 31	AD4	B	219	225	Right-handed alpha
Helix 32	AD5	B	226	230	Right-handed 310
Helix 33	AD6	B	244	248	Right-handed 310
Helix 34	AD7	B	255	270	Right-handed alpha
Helix 35	AD8	B	274	287	Right-handed alpha
Helix 36	AD9	B	289	311	Right-handed alpha
Helix 37	AE1	B	331	335	Right-handed 310
Helix 38	AE2	B	347	360	Right-handed alpha
Helix 39	AE3	B	367	370	Right-handed 310
Helix 40	AE4	B	382	399	Right-handed alpha
Helix 41	AE5	C	5	10	Right-handed alpha
Helix 42	AE6	C	46	60	Right-handed alpha
Helix 43	AE7	C	70	86	Right-handed alpha
Helix 44	AE8	C	90	92	Right-handed 310
Helix 45	AE9	C	98	112	Right-handed alpha
Helix 46	AF1	C	126	135	Right-handed alpha
Helix 47	AF2	C	145	149	Right-handed 310
Helix 48	AF3	C	153	161	Right-handed alpha
Helix 49	AF4	C	182	195	Right-handed alpha
Helix 50	AF5	C	219	225	Right-handed alpha
Helix 51	AF6	C	226	230	Right-handed 310
Helix 52	AF7	C	244	248	Right-handed 310
Helix 53	AF8	C	255	270	Right-handed alpha
Helix 54	AF9	C	274	287	Right-handed alpha
Helix 55	AG1	C	289	311	Right-handed alpha
Helix 56	AG2	C	331	335	Right-handed 310
Helix 57	AG3	C	347	360	Right-handed alpha
Helix 58	AG4	C	367	370	Right-handed 310
Helix 59	AG5	C	382	399	Right-handed alpha
Helix 60	AG6	D	6	11	Right-handed alpha
Helix 61	AG7	D	14	29	Right-handed alpha
Helix 62	AG8	D	46	60	Right-handed alpha
Helix 63	AG9	D	70	86	Right-handed alpha
Helix 64	AH1	D	90	92	Right-handed 310
Helix 65	AH2	D	98	110	Right-handed alpha
Helix 66	AH3	D	126	136	Right-handed alpha
Helix 67	AH4	D	145	149	Right-handed 310
Helix 68	AH5	D	153	161	Right-handed alpha
Helix 69	AH6	D	182	195	Right-handed alpha
Helix 70	AH7	D	219	225	Right-handed alpha
Helix 71	AH8	D	226	230	Right-handed 310
Helix 72	AH9	D	244	248	Right-handed 310
Helix 73	AI1	D	255	270	Right-handed alpha
Helix 74	AI2	D	274	287	Right-handed alpha
Helix 75	AI3	D	289	311	Right-handed alpha
Helix 76	AI4	D	331	335	Right-handed 310
Helix 77	AI5	D	347	360	Right-handed alpha
Helix 78	AI6	D	367	370	Right-handed 310
Helix 79	AI7	D	382	400	Right-handed alpha
Helix 80	AI8	E	5	11	Right-handed 310
Helix 81	AI9	E	14	29	Right-handed alpha
Helix 82	AJ1	E	46	60	Right-handed alpha
Helix 83	AJ2	E	70	86	Right-handed alpha
Helix 84	AJ3	E	90	92	Right-handed 310
Helix 85	AJ4	E	98	110	Right-handed alpha
Helix 86	AJ5	E	126	135	Right-handed alpha
Helix 87	AJ6	E	145	149	Right-handed 310
Helix 88	AJ7	E	153	161	Right-handed alpha
Helix 89	AJ8	E	182	194	Right-handed alpha
Helix 90	AJ9	E	219	225	Right-handed alpha
Helix 91	AK1	E	226	230	Right-handed 310
Helix 92	AK2	E	244	248	Right-handed 310
Helix 93	AK3	E	255	270	Right-handed alpha
Helix 94	AK4	E	274	287	Right-handed alpha
Helix 95	AK5	E	289	311	Right-handed alpha
Helix 96	AK6	E	331	335	Right-handed 310
Helix 97	AK7	E	347	360	Right-handed alpha
Helix 98	AK8	E	367	370	Right-handed 310
Helix 99	AK9	E	382	400	Right-handed alpha
Helix 100	AL1	F	5	11	Right-handed 310
Helix 101	AL2	F	15	29	Right-handed alpha
Helix 102	AL3	F	46	60	Right-handed alpha
Helix 103	AL4	F	70	86	Right-handed alpha
Helix 104	AL5	F	90	92	Right-handed 310
Helix 105	AL6	F	99	110	Right-handed alpha
Helix 106	AL7	F	126	135	Right-handed alpha
Helix 107	AL8	F	145	149	Right-handed 310
Helix 108	AL9	F	153	161	Right-handed alpha
Helix 109	AM1	F	182	195	Right-handed alpha
Helix 110	AM2	F	219	225	Right-handed alpha
Helix 111	AM3	F	226	230	Right-handed 310
Helix 112	AM4	F	244	247	Right-handed 310
Helix 113	AM5	F	255	270	Right-handed alpha
Helix 114	AM6	F	274	287	Right-handed alpha
Helix 115	AM7	F	289	311	Right-handed alpha
Helix 116	AM8	F	331	335	Right-handed 310
Helix 117	AM9	F	347	360	Right-handed alpha
Helix 118	AN1	F	367	370	Right-handed 310
Helix 119	AN2	F	382	400	Right-handed alpha

There are 18 sheets in PDB entry 6F77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	361	362	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	250	253	anti-parallel
Strand 3	A	232	237	anti-parallel
Strand 4	A	200	204	parallel
Strand 5	A	165	171	parallel
Strand 6	A	117	122	parallel
Strand 7	A	138	143	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	375	378	anti-parallel
Strand 3	A	364	365	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	361	362	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	250	253	anti-parallel
Strand 3	B	232	237	anti-parallel
Strand 4	B	200	204	parallel
Strand 5	B	165	171	parallel
Strand 6	B	117	122	parallel
Strand 7	B	138	143	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	375	378	anti-parallel
Strand 3	B	364	365	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	361	362	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	97	first strand
Strand 2	C	250	253	anti-parallel
Strand 3	C	232	237	anti-parallel
Strand 4	C	200	204	parallel
Strand 5	C	165	171	parallel
Strand 6	C	117	122	parallel
Strand 7	C	138	143	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	327	first strand
Strand 2	C	375	378	anti-parallel
Strand 3	C	364	365	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	361	362	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	250	253	anti-parallel
Strand 3	D	232	237	anti-parallel
Strand 4	D	200	204	parallel
Strand 5	D	165	171	parallel
Strand 6	D	117	122	parallel
Strand 7	D	138	143	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	327	first strand
Strand 2	D	375	378	anti-parallel
Strand 3	D	364	365	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	361	362	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	97	first strand
Strand 2	E	250	253	anti-parallel
Strand 3	E	232	237	anti-parallel
Strand 4	E	200	204	parallel
Strand 5	E	165	171	parallel
Strand 6	E	117	122	parallel
Strand 7	E	138	143	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	326	327	first strand
Strand 2	E	375	378	anti-parallel
Strand 3	E	364	365	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	35	first strand
Strand 2	F	361	362	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	98	first strand
Strand 2	F	249	253	anti-parallel
Strand 3	F	232	237	anti-parallel
Strand 4	F	200	204	parallel
Strand 5	F	165	171	parallel
Strand 6	F	117	122	parallel
Strand 7	F	138	143	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	326	327	first strand
Strand 2	F	375	378	anti-parallel
Strand 3	F	364	365	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F77

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F77