Analysis of interatomic Contacts of Structural Units in PDB entry:
6F7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F7D entry

There is 1 chain in PDB entry 6F7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10ASN 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6F7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 30Right-handed alpha
Helix 2
AA2
A
50 65Right-handed alpha
Helix 3
AA3
A
165 169Right-handed 310
Helix 4
AA4
A
211 215Right-handed 310
Helix 5
AA5
A
332 338Right-handed alpha
Helix 6
AA6
A
407 412Right-handed alpha
Helix 7
AA7
A
527 532Right-handed 310
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There are 10 sheets in PDB entry 6F7D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
67 70parallel
Strand 3
A
87 90parallel
Strand 4
A
116 118parallel
Strand 5
A
148 150parallel
Strand 6
A
182 184parallel
Strand 7
A
202 204parallel
Strand 8
A
240 242parallel
Strand 9
A
267 269parallel
Strand 10
A
299 301parallel
Strand 11
A
322 324parallel
Strand 12
A
363 365parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
96 99parallel
Strand 3
A
121 123parallel
Strand 4
A
153 157parallel
Strand 5
A
187 190parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
108 110parallel
Strand 3
A
138 140parallel
Strand 4
A
174 176parallel
Strand 5
A
194 196parallel
Strand 6
A
231 234parallel
Strand 7
A
254 257parallel
Strand 8
A
281 284parallel
Strand 9
A
313 316parallel
Strand 10
A
348 351parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
272 274parallel
Strand 3
A
304 306parallel
Strand 4
A
327 329parallel
Strand 5
A
368 370parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
294 296parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 422first strand
Strand 2
A
440 446anti-parallel
Strand 3
A
449 457anti-parallel
Strand 4
A
537 545anti-parallel
Strand 5
A
490 492anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 428first strand
Strand 2
A
468 471anti-parallel
Strand 3
A
514 518anti-parallel
Strand 4
A
502 506anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 520first strand
Strand 2
A
523 525anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 435first strand
Strand 2
A
458 462anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 488first strand
Strand 2
A
540 546anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il