Analysis of interatomic Contacts of Structural Units in PDB entry:
6F7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F7J entry

There are 2 chains in PDB entry 6F7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 173GLU 269
B
 LEU 409PRO 762
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6F7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
174 191Right-handed alpha
Helix 2
AA2
A
194 202Right-handed alpha
Helix 3
AA3
A
202 231Right-handed alpha
Helix 4
AA4
A
239 241Right-handed 310
Helix 5
AA5
A
242 258Right-handed alpha
Helix 6
AA6
A
263 269Right-handed 310
Helix 7
AA7
B
432 442Right-handed alpha
Helix 8
AA8
B
455 459Right-handed 310
Helix 9
AA9
B
473 481Right-handed alpha
Helix 10
AB1
B
507 511Right-handed 310
Helix 11
AB2
B
512 535Right-handed alpha
Helix 12
AB3
B
554 558Right-handed 310
Helix 13
AB4
B
560 565Right-handed alpha
Helix 14
AB5
B
569 577Right-handed alpha
Helix 15
AB6
B
601 618Right-handed alpha
Helix 16
AB7
B
656 670Right-handed alpha
Helix 17
AB8
B
671 674Right-handed 310
Helix 18
AB9
B
680 688Right-handed alpha
Helix 19
AC1
B
691 704Right-handed alpha
Helix 20
AC2
B
723 734Right-handed alpha
Helix 21
AC3
B
735 755Right-handed alpha
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There are 4 sheets in PDB entry 6F7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 451first strand
Strand 2
B
462 468anti-parallel
Strand 3
B
421 427anti-parallel
Strand 4
B
494 496anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
485 486first strand
Strand 2
B
489 490anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
503 505first strand
Strand 2
B
642 644parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
621 622first strand
Strand 2
B
627 628anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il