Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6F7X entry
There are 12 chains in PDB entry 6F7X
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
SER 2 | GLY 24 |
A
|
ILE 26 | GLY 33 |
A
|
GLY 35 | THR 82 |
A
|
GLY 84 | ASN 90 |
B
|
SER 2 | GLY 24 |
B
|
ILE 26 | GLY 33 |
B
|
GLY 35 | THR 82 |
B
|
GLY 84 | ASN 90 |
C
|
SER 2 | GLY 24 |
C
|
ILE 26 | GLY 33 |
C
|
GLY 35 | THR 82 |
C
|
GLY 84 | ASN 90 |
Back to top of page
There are no helices in PDB entry
6F7X
There are
6 sheets in PDB entry 6F7X. Click on sheet of
interest to get list of strands forming it:
AA1,
AA2,
AA3,
AA4,
AA5,
AA6,
There are 4
strands in AA1 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
| Strand 1 |
A
| 4 |
10 | first strand |
| Strand 2 |
A
| 15 |
22 | anti-parallel |
| Strand 3 |
A
| 25 |
31 | anti-parallel |
| Strand 4 |
A
| 36 |
44 | anti-parallel |
Back to list of sheets
Back to top of page
There are 4
strands in AA2 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
| Strand 1 |
A
| 47 |
55 | first strand |
| Strand 2 |
A
| 58 |
67 | anti-parallel |
| Strand 3 |
A
| 70 |
76 | anti-parallel |
| Strand 4 |
A
| 81 |
83 | anti-parallel |
Back to list of sheets
Back to top of page
There are 4
strands in AA3 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
| Strand 1 |
B
| 4 |
10 | first strand |
| Strand 2 |
B
| 15 |
22 | anti-parallel |
| Strand 3 |
B
| 25 |
31 | anti-parallel |
| Strand 4 |
B
| 36 |
44 | anti-parallel |
Back to list of sheets
Back to top of page
There are 4
strands in AA4 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
| Strand 1 |
B
| 47 |
55 | first strand |
| Strand 2 |
B
| 58 |
67 | anti-parallel |
| Strand 3 |
B
| 70 |
76 | anti-parallel |
| Strand 4 |
B
| 81 |
83 | anti-parallel |
Back to list of sheets
Back to top of page
There are 4
strands in AA5 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
| Strand 1 |
C
| 4 |
10 | first strand |
| Strand 2 |
C
| 15 |
22 | anti-parallel |
| Strand 3 |
C
| 25 |
31 | anti-parallel |
| Strand 4 |
C
| 36 |
44 | anti-parallel |
Back to list of sheets
Back to top of page
There are 4
strands in AA6 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
| Strand 1 |
C
| 47 |
55 | first strand |
| Strand 2 |
C
| 58 |
67 | anti-parallel |
| Strand 3 |
C
| 70 |
76 | anti-parallel |
| Strand 4 |
C
| 81 |
83 | anti-parallel |
Back to list of sheets
Back to top of page
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il