Analysis of interatomic Contacts of Structural Units in PDB entry:
6F87

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F87 entry

There are 4 chains in PDB entry 6F87 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	HIS 341
B	THR 2	HIS 341
C	THR 2	HIS 341
D	THR 2	HIS 341

There are 48 helices in PDB entry 6F87. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	45	57	Right-handed alpha
Helix 3	AA3	A	71	78	Right-handed alpha
Helix 4	AA4	A	82	93	Right-handed alpha
Helix 5	AA5	A	108	113	Right-handed alpha
Helix 6	AA6	A	125	136	Right-handed alpha
Helix 7	AA7	A	154	163	Right-handed alpha
Helix 8	AA8	A	200	209	Right-handed alpha
Helix 9	AA9	A	215	219	Right-handed 310
Helix 10	AB1	A	247	265	Right-handed alpha
Helix 11	AB2	A	288	305	Right-handed alpha
Helix 12	AB3	A	321	334	Right-handed alpha
Helix 13	AB4	B	12	25	Right-handed alpha
Helix 14	AB5	B	45	57	Right-handed alpha
Helix 15	AB6	B	72	78	Right-handed alpha
Helix 16	AB7	B	82	93	Right-handed alpha
Helix 17	AB8	B	108	113	Right-handed alpha
Helix 18	AB9	B	125	136	Right-handed alpha
Helix 19	AC1	B	154	163	Right-handed alpha
Helix 20	AC2	B	200	209	Right-handed alpha
Helix 21	AC3	B	215	219	Right-handed 310
Helix 22	AC4	B	247	265	Right-handed alpha
Helix 23	AC5	B	288	306	Right-handed alpha
Helix 24	AC6	B	321	333	Right-handed alpha
Helix 25	AC7	C	12	25	Right-handed alpha
Helix 26	AC8	C	45	57	Right-handed alpha
Helix 27	AC9	C	71	78	Right-handed alpha
Helix 28	AD1	C	82	93	Right-handed alpha
Helix 29	AD2	C	108	113	Right-handed alpha
Helix 30	AD3	C	125	136	Right-handed alpha
Helix 31	AD4	C	154	163	Right-handed alpha
Helix 32	AD5	C	200	209	Right-handed alpha
Helix 33	AD6	C	215	219	Right-handed 310
Helix 34	AD7	C	247	265	Right-handed alpha
Helix 35	AD8	C	288	306	Right-handed alpha
Helix 36	AD9	C	321	334	Right-handed alpha
Helix 37	AE1	D	12	25	Right-handed alpha
Helix 38	AE2	D	45	57	Right-handed alpha
Helix 39	AE3	D	70	72	Right-handed 310
Helix 40	AE4	D	73	78	Right-handed alpha
Helix 41	AE5	D	82	93	Right-handed alpha
Helix 42	AE6	D	125	136	Right-handed alpha
Helix 43	AE7	D	154	163	Right-handed alpha
Helix 44	AE8	D	200	208	Right-handed alpha
Helix 45	AE9	D	215	219	Right-handed 310
Helix 46	AF1	D	247	265	Right-handed alpha
Helix 47	AF2	D	288	306	Right-handed alpha
Helix 48	AF3	D	321	334	Right-handed alpha

There are 6 sheets in PDB entry 6F87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	192	195	parallel
Strand 3	A	182	185	anti-parallel
Strand 4	A	97	102	parallel
Strand 5	A	117	121	anti-parallel
Strand 6	A	65	67	parallel
Strand 7	A	139	141	anti-parallel
Strand 8	A	38	42	anti-parallel
Strand 9	A	29	31	anti-parallel
Strand 10	A	168	171	parallel
Strand 11	A	3	6	parallel
Strand 12	C	3	6	anti-parallel
Strand 13	C	168	171	parallel
Strand 14	C	29	31	parallel
Strand 15	C	38	42	anti-parallel
Strand 16	C	139	140	anti-parallel
Strand 17	C	65	67	anti-parallel
Strand 18	C	117	121	parallel
Strand 19	C	97	102	anti-parallel
Strand 20	C	182	185	parallel
Strand 21	C	192	195	anti-parallel
Strand 22	C	212	213	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	284	first strand
Strand 2	A	269	273	parallel
Strand 3	A	310	314	parallel
Strand 4	A	240	245	parallel
Strand 5	A	337	339	parallel

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There are 22 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	192	195	parallel
Strand 3	B	182	185	anti-parallel
Strand 4	B	97	102	parallel
Strand 5	B	117	121	anti-parallel
Strand 6	B	65	67	parallel
Strand 7	B	139	140	anti-parallel
Strand 8	B	38	42	anti-parallel
Strand 9	B	29	31	anti-parallel
Strand 10	B	168	171	parallel
Strand 11	B	3	6	parallel
Strand 12	D	3	6	anti-parallel
Strand 13	D	168	171	parallel
Strand 14	D	29	31	parallel
Strand 15	D	38	42	anti-parallel
Strand 16	D	139	140	anti-parallel
Strand 17	D	65	67	anti-parallel
Strand 18	D	117	121	parallel
Strand 19	D	97	102	anti-parallel
Strand 20	D	182	185	parallel
Strand 21	D	192	195	anti-parallel
Strand 22	D	212	213	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	284	first strand
Strand 2	B	269	273	parallel
Strand 3	B	310	314	parallel
Strand 4	B	240	244	parallel
Strand 5	B	337	338	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	283	first strand
Strand 2	C	269	272	parallel
Strand 3	C	310	314	parallel
Strand 4	C	240	245	parallel
Strand 5	C	337	339	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	284	first strand
Strand 2	D	269	273	parallel
Strand 3	D	310	314	parallel
Strand 4	D	240	245	parallel
Strand 5	D	337	339	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F87

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F87