Analysis of interatomic Contacts of Structural Units in PDB entry:
6F89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F89 entry

There are 2 chains in PDB entry 6F89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 345
B
 MET 1HIS 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 6F89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
45 57Right-handed alpha
Helix 3
AA3
A
70 78Right-handed alpha
Helix 4
AA4
A
82 93Right-handed alpha
Helix 5
AA5
A
125 136Right-handed alpha
Helix 6
AA6
A
154 163Right-handed alpha
Helix 7
AA7
A
200 208Right-handed alpha
Helix 8
AA8
A
215 219Right-handed 310
Helix 9
AA9
A
247 265Right-handed alpha
Helix 10
AB1
A
288 306Right-handed alpha
Helix 11
AB2
A
321 333Right-handed alpha
Helix 12
AB3
B
12 25Right-handed alpha
Helix 13
AB4
B
45 57Right-handed alpha
Helix 14
AB5
B
70 78Right-handed alpha
Helix 15
AB6
B
82 93Right-handed alpha
Helix 16
AB7
B
108 113Right-handed alpha
Helix 17
AB8
B
125 136Right-handed alpha
Helix 18
AB9
B
154 163Right-handed alpha
Helix 19
AC1
B
200 208Right-handed alpha
Helix 20
AC2
B
247 265Right-handed alpha
Helix 21
AC3
B
288 307Right-handed alpha
Helix 22
AC4
B
320 330Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6F89. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
168 171parallel
Strand 3
A
29 31parallel
Strand 4
A
38 42anti-parallel
Strand 5
A
139 140anti-parallel
Strand 6
A
65 67anti-parallel
Strand 7
A
117 121parallel
Strand 8
A
97 102anti-parallel
Strand 9
A
182 185parallel
Strand 10
A
192 195anti-parallel
Strand 11
A
212 213parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
269 273parallel
Strand 3
A
310 314parallel
Strand 4
A
240 245parallel
Strand 5
A
337 339parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
168 171parallel
Strand 3
B
29 31parallel
Strand 4
B
38 42anti-parallel
Strand 5
B
139 140anti-parallel
Strand 6
B
65 67anti-parallel
Strand 7
B
117 121parallel
Strand 8
B
97 102anti-parallel
Strand 9
B
182 185parallel
Strand 10
B
192 195anti-parallel
Strand 11
B
212 213parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 284first strand
Strand 2
B
269 273parallel
Strand 3
B
310 314parallel
Strand 4
B
240 245parallel
Strand 5
B
335 339parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il