Analysis of interatomic Contacts of Structural Units in PDB entry:
6F8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F8A entry

There are 2 chains in PDB entry 6F8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 394
B
 ASP 2HIS 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 6F8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
45 55Right-handed alpha
Helix 3
AA3
A
61 67Right-handed 310
Helix 4
AA4
A
77 91Right-handed alpha
Helix 5
AA5
A
93 104Right-handed alpha
Helix 6
AA6
A
104 115Right-handed alpha
Helix 7
AA7
A
124 128Right-handed alpha
Helix 8
AA8
A
130 142Right-handed alpha
Helix 9
AA9
A
144 150Right-handed alpha
Helix 10
AB1
A
151 161Right-handed alpha
Helix 11
AB2
A
167 180Right-handed alpha
Helix 12
AB3
A
181 193Right-handed alpha
Helix 13
AB4
A
199 211Right-handed alpha
Helix 14
AB5
A
215 229Right-handed alpha
Helix 15
AB6
A
231 247Right-handed alpha
Helix 16
AB7
A
248 258Right-handed alpha
Helix 17
AB8
A
261 273Right-handed alpha
Helix 18
AB9
A
304 310Right-handed 310
Helix 19
AC1
A
335 339Right-handed 310
Helix 20
AC2
A
342 361Right-handed alpha
Helix 21
AC3
A
378 381Right-handed 310
Helix 22
AC4
B
17 30Right-handed alpha
Helix 23
AC5
B
45 55Right-handed alpha
Helix 24
AC6
B
61 67Right-handed 310
Helix 25
AC7
B
72 76Right-handed 310
Helix 26
AC8
B
77 91Right-handed alpha
Helix 27
AC9
B
93 104Right-handed alpha
Helix 28
AD1
B
104 116Right-handed alpha
Helix 29
AD2
B
124 128Right-handed alpha
Helix 30
AD3
B
130 142Right-handed alpha
Helix 31
AD4
B
144 150Right-handed alpha
Helix 32
AD5
B
151 164Right-handed alpha
Helix 33
AD6
B
167 180Right-handed alpha
Helix 34
AD7
B
181 194Right-handed alpha
Helix 35
AD8
B
199 211Right-handed alpha
Helix 36
AD9
B
215 229Right-handed alpha
Helix 37
AE1
B
231 248Right-handed alpha
Helix 38
AE2
B
248 258Right-handed alpha
Helix 39
AE3
B
261 273Right-handed alpha
Helix 40
AE4
B
304 308Right-handed 310
Helix 41
AE5
B
335 339Right-handed 310
Helix 42
AE6
B
342 361Right-handed alpha
Helix 43
AE7
B
378 381Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 6F8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
32 35parallel
Strand 3
A
40 43anti-parallel
Strand 4
A
299 302parallel
Strand 5
A
279 283anti-parallel
Strand 6
A
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
390 392anti-parallel
Strand 3
A
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
292 294anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
384 386anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
32 35parallel
Strand 3
B
40 43anti-parallel
Strand 4
B
299 302parallel
Strand 5
B
279 283anti-parallel
Strand 6
B
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 123first strand
Strand 2
B
390 392anti-parallel
Strand 3
B
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
292 294anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 376first strand
Strand 2
B
384 386anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il