Analysis of interatomic Contacts of Structural Units in PDB entry:
6F8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F8D entry

There are 4 chains in PDB entry 6F8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 174GLU 269
C
 CYS 411PRO 762
B
 LYS 176GLU 269
D
 CYS 411PRO 762
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6F8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
175 191Right-handed alpha
Helix 2
AA2
A
194 202Right-handed alpha
Helix 3
AA3
A
202 231Right-handed alpha
Helix 4
AA4
A
239 241Right-handed 310
Helix 5
AA5
A
242 259Right-handed alpha
Helix 6
AA6
A
261 266Right-handed alpha
Helix 7
AA7
A
267 269Right-handed 310
Helix 8
AA8
C
432 442Right-handed alpha
Helix 9
AA9
C
455 459Right-handed 310
Helix 10
AB1
C
473 481Right-handed alpha
Helix 11
AB2
C
507 511Right-handed 310
Helix 12
AB3
C
512 535Right-handed alpha
Helix 13
AB4
C
560 565Right-handed alpha
Helix 14
AB5
C
570 577Right-handed alpha
Helix 15
AB6
C
601 618Right-handed alpha
Helix 16
AB7
C
656 670Right-handed alpha
Helix 17
AB8
C
671 674Right-handed 310
Helix 18
AB9
C
680 688Right-handed alpha
Helix 19
AC1
C
691 703Right-handed alpha
Helix 20
AC2
C
725 734Right-handed alpha
Helix 21
AC3
C
735 755Right-handed alpha
Helix 22
AC4
B
177 191Right-handed alpha
Helix 23
AC5
B
194 202Right-handed alpha
Helix 24
AC6
B
202 231Right-handed alpha
Helix 25
AC7
B
239 241Right-handed 310
Helix 26
AC8
B
242 259Right-handed alpha
Helix 27
AC9
B
261 266Right-handed alpha
Helix 28
AD1
B
267 269Right-handed 310
Helix 29
AD2
D
432 442Right-handed alpha
Helix 30
AD3
D
455 459Right-handed 310
Helix 31
AD4
D
473 481Right-handed alpha
Helix 32
AD5
D
507 511Right-handed 310
Helix 33
AD6
D
512 535Right-handed alpha
Helix 34
AD7
D
560 565Right-handed alpha
Helix 35
AD8
D
570 577Right-handed alpha
Helix 36
AD9
D
601 618Right-handed alpha
Helix 37
AE1
D
656 670Right-handed alpha
Helix 38
AE2
D
671 674Right-handed 310
Helix 39
AE3
D
680 688Right-handed alpha
Helix 40
AE4
D
691 703Right-handed alpha
Helix 41
AE5
D
725 734Right-handed alpha
Helix 42
AE6
D
735 755Right-handed alpha
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There are 6 sheets in PDB entry 6F8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
446 451first strand
Strand 2
C
462 468anti-parallel
Strand 3
C
421 427anti-parallel
Strand 4
C
494 496anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
504 505first strand
Strand 2
C
643 644parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
621 622first strand
Strand 2
C
627 628anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
446 451first strand
Strand 2
D
462 468anti-parallel
Strand 3
D
421 427anti-parallel
Strand 4
D
494 496anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
504 505first strand
Strand 2
D
643 644parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
621 622first strand
Strand 2
D
627 628anti-parallel
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