Analysis of interatomic Contacts of Structural Units in PDB entry:
6F8G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F8G entry

There are 8 chains in PDB entry 6F8G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 24	GLN 165
B	MET 24	GLN 165
C	MET 24	GLN 165
D	SER 26	GLN 165
E	PRO 223	GLU 233
F	PRO 223	GLY 232
G	PRO 223	GLU 233
H	GLU 224	GLY 232

There are 18 helices in PDB entry 6F8G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	64	Right-handed 310
Helix 2	AA2	A	139	144	Right-handed alpha
Helix 3	AA3	A	150	154	Right-handed 310
Helix 4	AA4	B	40	42	Right-handed 310
Helix 5	AA5	B	43	49	Right-handed alpha
Helix 6	AA6	B	139	144	Right-handed alpha
Helix 7	AA7	B	145	148	Right-handed 310
Helix 8	AA8	B	150	154	Right-handed 310
Helix 9	AA9	C	60	64	Right-handed 310
Helix 10	AB1	C	139	144	Right-handed alpha
Helix 11	AB2	C	145	148	Right-handed 310
Helix 12	AB3	C	150	154	Right-handed 310
Helix 13	AB4	D	40	42	Right-handed 310
Helix 14	AB5	D	43	49	Right-handed alpha
Helix 15	AB6	D	60	64	Right-handed 310
Helix 16	AB7	D	139	143	Right-handed alpha
Helix 17	AB8	D	144	148	Right-handed 310
Helix 18	AB9	D	150	154	Right-handed 310

There are 8 sheets in PDB entry 6F8G. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	38	first strand
Strand 2	A	155	163	anti-parallel
Strand 3	A	98	107	anti-parallel
Strand 4	A	123	125	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	65	72	anti-parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	130	133	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	38	first strand
Strand 2	B	155	163	anti-parallel
Strand 3	B	98	106	anti-parallel
Strand 4	B	123	125	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	65	72	anti-parallel
Strand 3	B	85	93	anti-parallel
Strand 4	B	130	133	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	38	first strand
Strand 2	C	155	163	anti-parallel
Strand 3	C	98	107	anti-parallel
Strand 4	C	123	125	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	65	72	anti-parallel
Strand 3	C	85	92	anti-parallel
Strand 4	C	130	133	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	38	first strand
Strand 2	D	155	163	anti-parallel
Strand 3	D	98	106	anti-parallel
Strand 4	D	123	125	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	65	72	anti-parallel
Strand 3	D	85	92	anti-parallel
Strand 4	D	130	133	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F8G

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F8G