Analysis of interatomic Contacts of Structural Units in PDB entry:
6F8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F8P entry

There is 1 chain in PDB entry 6F8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 154SER 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6F8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
175 180Right-handed alpha
Helix 2
AA2
A
191 196Right-handed 310
Helix 3
AA3
A
200 206Right-handed alpha
Helix 4
AA4
A
211 218Right-handed alpha
Helix 5
AA5
A
239 245Right-handed alpha
Helix 6
AA6
A
368 370Right-handed 310
Helix 7
AA7
A
398 402Right-handed 310
Helix 8
AA8
A
416 423Right-handed alpha
Helix 9
AA9
A
426 430Right-handed 310
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There are 6 sheets in PDB entry 6F8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
266 270parallel
Strand 3
A
256 260anti-parallel
Strand 4
A
297 298parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
284 286anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
456 469anti-parallel
Strand 3
A
321 324anti-parallel
Strand 4
A
327 328anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
456 469anti-parallel
Strand 3
A
335 347anti-parallel
Strand 4
A
354 355anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 364first strand
Strand 2
A
442 447anti-parallel
Strand 3
A
450 452anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 397first strand
Strand 2
A
372 377anti-parallel
Strand 3
A
432 436anti-parallel
Strand 4
A
413 415parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il