Analysis of interatomic Contacts of Structural Units in PDB entry:
6F90

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F90 entry

There are 3 chains in PDB entry 6F90 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 20	LYS 735
B	ALA 20	GLY 734
C	GLU 22	GLY 732

There are 72 helices in PDB entry 6F90. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	27	Right-handed 310
Helix 2	AA2	A	66	70	Right-handed 310
Helix 3	AA3	A	114	116	Right-handed 310
Helix 4	AA4	A	261	273	Right-handed alpha
Helix 5	AA5	A	277	294	Right-handed alpha
Helix 6	AA6	A	301	317	Right-handed alpha
Helix 7	AA7	A	350	355	Right-handed alpha
Helix 8	AA8	A	357	366	Right-handed alpha
Helix 9	AA9	A	366	385	Right-handed alpha
Helix 10	AB1	A	404	415	Right-handed alpha
Helix 11	AB2	A	421	435	Right-handed alpha
Helix 12	AB3	A	441	449	Right-handed alpha
Helix 13	AB4	A	458	480	Right-handed alpha
Helix 14	AB5	A	482	494	Right-handed alpha
Helix 15	AB6	A	495	500	Right-handed 310
Helix 16	AB7	A	537	542	Right-handed alpha
Helix 17	AB8	A	548	557	Right-handed alpha
Helix 18	AB9	A	558	572	Right-handed alpha
Helix 19	AC1	A	594	598	Right-handed 310
Helix 20	AC2	A	599	605	Right-handed 310
Helix 21	AC3	A	609	624	Right-handed alpha
Helix 22	AC4	A	639	651	Right-handed alpha
Helix 23	AC5	A	713	718	Right-handed alpha
Helix 24	AC6	B	23	27	Right-handed 310
Helix 25	AC7	B	66	70	Right-handed 310
Helix 26	AC8	B	114	116	Right-handed 310
Helix 27	AC9	B	261	273	Right-handed alpha
Helix 28	AD1	B	277	294	Right-handed alpha
Helix 29	AD2	B	301	317	Right-handed alpha
Helix 30	AD3	B	350	355	Right-handed alpha
Helix 31	AD4	B	357	366	Right-handed alpha
Helix 32	AD5	B	366	385	Right-handed alpha
Helix 33	AD6	B	404	415	Right-handed alpha
Helix 34	AD7	B	421	435	Right-handed alpha
Helix 35	AD8	B	441	449	Right-handed alpha
Helix 36	AD9	B	458	480	Right-handed alpha
Helix 37	AE1	B	482	494	Right-handed alpha
Helix 38	AE2	B	495	500	Right-handed 310
Helix 39	AE3	B	537	542	Right-handed alpha
Helix 40	AE4	B	543	544	Right-handed 310
Helix 41	AE5	B	545	547	Right-handed 310
Helix 42	AE6	B	548	557	Right-handed alpha
Helix 43	AE7	B	558	572	Right-handed alpha
Helix 44	AE8	B	594	598	Right-handed 310
Helix 45	AE9	B	600	602	Right-handed 310
Helix 46	AF1	B	603	608	Right-handed alpha
Helix 47	AF2	B	609	624	Right-handed alpha
Helix 48	AF3	B	639	651	Right-handed alpha
Helix 49	AF4	B	713	718	Right-handed alpha
Helix 50	AF5	C	66	70	Right-handed 310
Helix 51	AF6	C	114	118	Right-handed 310
Helix 52	AF7	C	261	273	Right-handed alpha
Helix 53	AF8	C	277	294	Right-handed alpha
Helix 54	AF9	C	301	317	Right-handed alpha
Helix 55	AG1	C	350	355	Right-handed alpha
Helix 56	AG2	C	357	366	Right-handed alpha
Helix 57	AG3	C	366	385	Right-handed alpha
Helix 58	AG4	C	405	415	Right-handed alpha
Helix 59	AG5	C	421	435	Right-handed alpha
Helix 60	AG6	C	441	449	Right-handed alpha
Helix 61	AG7	C	458	480	Right-handed alpha
Helix 62	AG8	C	482	494	Right-handed alpha
Helix 63	AG9	C	495	500	Right-handed 310
Helix 64	AH1	C	537	542	Right-handed alpha
Helix 65	AH2	C	548	557	Right-handed alpha
Helix 66	AH3	C	557	570	Right-handed alpha
Helix 67	AH4	C	596	602	Right-handed 310
Helix 68	AH5	C	603	608	Right-handed alpha
Helix 69	AH6	C	609	624	Right-handed alpha
Helix 70	AH7	C	639	651	Right-handed alpha
Helix 71	AH8	C	677	679	Right-handed 310
Helix 72	AH9	C	713	719	Right-handed alpha

There are 30 sheets in PDB entry 6F90. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	56	59	anti-parallel
Strand 3	A	83	84	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	111	112	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	104	first strand
Strand 2	A	157	162	anti-parallel
Strand 3	A	237	244	anti-parallel
Strand 4	A	216	221	anti-parallel
Strand 5	A	224	227	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	121	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	134	140	anti-parallel
Strand 4	A	144	150	anti-parallel
Strand 5	A	251	258	anti-parallel
Strand 6	A	202	210	anti-parallel
Strand 7	A	188	195	anti-parallel
Strand 8	A	176	185	anti-parallel
Strand 9	A	231	234	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	671	675	anti-parallel
Strand 3	A	681	687	anti-parallel
Strand 4	A	720	727	parallel
Strand 5	A	695	701	anti-parallel
Strand 6	A	704	705	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	346	347	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	336	338	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	395	396	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	587	first strand
Strand 2	A	590	591	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	653	first strand
Strand 2	A	661	664	anti-parallel
Strand 3	A	710	712	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	56	59	anti-parallel
Strand 3	B	83	84	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	80	first strand
Strand 2	B	111	112	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	104	first strand
Strand 2	B	158	162	anti-parallel
Strand 3	B	237	242	anti-parallel
Strand 4	B	216	221	anti-parallel
Strand 5	B	224	227	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	121	first strand
Strand 2	B	124	129	anti-parallel
Strand 3	B	134	140	anti-parallel
Strand 4	B	144	149	anti-parallel
Strand 5	B	251	258	anti-parallel
Strand 6	B	201	210	anti-parallel
Strand 7	B	188	196	anti-parallel
Strand 8	B	176	183	anti-parallel
Strand 9	B	231	234	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	671	676	anti-parallel
Strand 3	B	680	687	anti-parallel
Strand 4	B	720	727	parallel
Strand 5	B	695	701	anti-parallel
Strand 6	B	704	705	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	321	first strand
Strand 2	B	346	347	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	336	338	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	392	first strand
Strand 2	B	395	396	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	587	first strand
Strand 2	B	590	591	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	653	first strand
Strand 2	B	661	664	anti-parallel
Strand 3	B	710	712	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	56	60	anti-parallel
Strand 3	C	82	84	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	80	first strand
Strand 2	C	111	112	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	104	first strand
Strand 2	C	157	162	anti-parallel
Strand 3	C	237	244	anti-parallel
Strand 4	C	216	221	anti-parallel
Strand 5	C	224	227	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	124	129	anti-parallel
Strand 3	C	134	140	anti-parallel
Strand 4	C	144	150	anti-parallel
Strand 5	C	251	258	anti-parallel
Strand 6	C	202	210	anti-parallel
Strand 7	C	188	195	anti-parallel
Strand 8	C	176	185	anti-parallel
Strand 9	C	231	234	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	299	first strand
Strand 2	C	671	675	anti-parallel
Strand 3	C	681	687	anti-parallel
Strand 4	C	720	727	parallel
Strand 5	C	695	701	anti-parallel
Strand 6	C	704	705	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	321	first strand
Strand 2	C	346	347	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	330	first strand
Strand 2	C	336	338	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	395	396	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	587	first strand
Strand 2	C	590	591	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	653	first strand
Strand 2	C	661	664	anti-parallel
Strand 3	C	710	712	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F90

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F90