Analysis of interatomic Contacts of Structural Units in PDB entry:
6F97

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6F97 entry

There are 2 chains in PDB entry 6F97 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 5	THR 529
B	ILE 5	THR 529

There are 35 helices in PDB entry 6F97. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	26	Right-handed alpha
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	47	52	Right-handed alpha
Helix 4	AA4	A	57	62	Right-handed alpha
Helix 5	AA5	A	97	102	Right-handed alpha
Helix 6	AA6	A	110	120	Right-handed alpha
Helix 7	AA7	A	126	137	Right-handed alpha
Helix 8	AA8	A	161	165	Right-handed 310
Helix 9	AA9	A	166	179	Right-handed alpha
Helix 10	AB1	A	209	215	Right-handed alpha
Helix 11	AB2	A	216	221	Right-handed alpha
Helix 12	AB3	A	270	278	Right-handed alpha
Helix 13	AB4	A	282	289	Right-handed alpha
Helix 14	AB5	A	317	326	Right-handed alpha
Helix 15	AB6	A	399	419	Right-handed alpha
Helix 16	AB7	A	419	424	Right-handed alpha
Helix 17	AB8	A	443	448	Right-handed alpha
Helix 18	AB9	A	450	462	Right-handed alpha
Helix 19	AC1	A	500	504	Right-handed 310
Helix 20	AC2	A	512	529	Right-handed alpha
Helix 21	AC3	B	14	26	Right-handed alpha
Helix 22	AC4	B	110	120	Right-handed alpha
Helix 23	AC5	B	126	137	Right-handed alpha
Helix 24	AC6	B	166	179	Right-handed alpha
Helix 25	AC7	B	210	215	Right-handed alpha
Helix 26	AC8	B	216	221	Right-handed alpha
Helix 27	AC9	B	270	278	Right-handed alpha
Helix 28	AD1	B	282	289	Right-handed alpha
Helix 29	AD2	B	317	324	Right-handed alpha
Helix 30	AD3	B	399	418	Right-handed alpha
Helix 31	AD4	B	419	424	Right-handed alpha
Helix 32	AD5	B	443	449	Right-handed alpha
Helix 33	AD6	B	450	462	Right-handed alpha
Helix 34	AD7	B	500	504	Right-handed 310
Helix 35	AD8	B	512	529	Right-handed alpha

There are 12 sheets in PDB entry 6F97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	32	35	parallel
Strand 3	A	6	11	parallel
Strand 4	A	253	264	parallel
Strand 5	A	242	250	anti-parallel
Strand 6	A	231	239	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	228	first strand
Strand 2	A	32	35	parallel
Strand 3	A	6	11	parallel
Strand 4	A	253	264	parallel
Strand 5	A	496	498	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	72	76	anti-parallel
Strand 3	A	391	396	parallel
Strand 4	A	378	380	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	155	157	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	336	339	anti-parallel
Strand 3	A	351	358	anti-parallel
Strand 4	A	363	370	anti-parallel
Strand 5	A	308	315	anti-parallel
Strand 6	A	430	432	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	295	296	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	228	first strand
Strand 2	B	32	35	parallel
Strand 3	B	6	11	parallel
Strand 4	B	253	264	parallel
Strand 5	B	242	250	anti-parallel
Strand 6	B	231	239	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	228	first strand
Strand 2	B	32	35	parallel
Strand 3	B	6	11	parallel
Strand 4	B	253	264	parallel
Strand 5	B	496	498	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	72	76	anti-parallel
Strand 3	B	391	396	parallel
Strand 4	B	378	380	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	140	first strand
Strand 2	B	155	157	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	351	358	anti-parallel
Strand 4	B	363	370	anti-parallel
Strand 5	B	308	315	anti-parallel
Strand 6	B	430	432	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	295	296	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6F97

Analysis of interatomic Contacts of Structural Units in PDB entry:
6F97