Analysis of interatomic Contacts of Structural Units in PDB entry:
6F9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F9J entry

There is 1 chain in PDB entry 6F9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLY 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 6F9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
29 43Right-handed alpha
Helix 3
AA3
A
54 58Right-handed alpha
Helix 4
AA4
A
67 80Right-handed alpha
Helix 5
AA5
A
106 116Right-handed alpha
Helix 6
AA6
A
135 138Right-handed 310
Helix 7
AA7
A
147 163Right-handed alpha
Helix 8
AA8
A
163 169Right-handed alpha
Helix 9
AA9
A
180 184Right-handed 310
Helix 10
AB1
A
191 195Right-handed 310
Helix 11
AB2
A
208 222Right-handed alpha
Helix 12
AB3
A
239 243Right-handed 310
Helix 13
AB4
A
250 253Right-handed 310
Helix 14
AB5
A
254 284Right-handed alpha
Helix 15
AB6
A
306 313Right-handed alpha
Helix 16
AB7
A
323 332Right-handed alpha
Helix 17
AB8
A
345 349Right-handed 310
Helix 18
AB9
A
356 371Right-handed alpha
Helix 19
AC1
A
385 397Right-handed alpha
Helix 20
AC2
A
425 440Right-handed alpha
Helix 21
AC3
A
463 469Right-handed alpha
Helix 22
AC4
A
470 472Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6F9J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
47 53parallel
Strand 3
A
83 89parallel
Strand 4
A
172 177parallel
Strand 5
A
289 293parallel
Strand 6
A
336 339parallel
Strand 7
A
375 378parallel
Strand 8
A
413 416parallel
Strand 9
A
11 15parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
128 133anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il