Analysis of interatomic Contacts of Structural Units in PDB entry:
6F9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F9M entry

There are 2 chains in PDB entry 6F9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3ASN 310
B
 ASN 3ASN 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 6F9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 28Right-handed alpha
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
37 41Right-handed 310
Helix 4
AA4
A
59 61Right-handed 310
Helix 5
AA5
A
71 76Right-handed 310
Helix 6
AA6
A
85 96Right-handed alpha
Helix 7
AA7
A
126 140Right-handed alpha
Helix 8
AA8
A
161 174Right-handed alpha
Helix 9
AA9
A
240 242Right-handed 310
Helix 10
AB1
A
249 273Right-handed alpha
Helix 11
AB2
A
277 288Right-handed alpha
Helix 12
AB3
A
295 300Right-handed alpha
Helix 13
AB4
B
22 28Right-handed alpha
Helix 14
AB5
B
30 35Right-handed alpha
Helix 15
AB6
B
37 41Right-handed 310
Helix 16
AB7
B
59 61Right-handed 310
Helix 17
AB8
B
71 76Right-handed 310
Helix 18
AB9
B
85 96Right-handed alpha
Helix 19
AC1
B
126 140Right-handed alpha
Helix 20
AC2
B
161 174Right-handed alpha
Helix 21
AC3
B
240 242Right-handed 310
Helix 22
AC4
B
249 252Right-handed 310
Helix 23
AC5
B
253 273Right-handed alpha
Helix 24
AC6
B
277 288Right-handed alpha
Helix 25
AC7
B
295 300Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6F9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
4 6anti-parallel
Strand 3
A
155 156anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 68first strand
Strand 2
A
112 117parallel
Strand 3
A
44 49parallel
Strand 4
A
150 153parallel
Strand 5
A
178 181parallel
Strand 6
A
205 210parallel
Strand 7
A
228 231parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
303 304anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
4 6anti-parallel
Strand 3
B
155 156anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 15first strand
Strand 2
B
244 248anti-parallel
Strand 3
B
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 68first strand
Strand 2
B
112 117parallel
Strand 3
B
44 49parallel
Strand 4
B
150 153parallel
Strand 5
B
178 181parallel
Strand 6
B
205 210parallel
Strand 7
B
228 231parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 290first strand
Strand 2
B
303 304anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il