Analysis of interatomic Contacts of Structural Units in PDB entry:
6F9S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6F9S entry

There are 2 chains in PDB entry 6F9S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 303TYR 469
B
 PRO 180GLY 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 6F9S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
317 319Right-handed 310
Helix 2
AA2
A
320 332Right-handed alpha
Helix 3
AA3
A
343 357Right-handed alpha
Helix 4
AA4
A
369 383Right-handed alpha
Helix 5
AA5
A
414 423Right-handed alpha
Helix 6
AA6
A
439 441Right-handed 310
Helix 7
AA7
A
442 453Right-handed alpha
Helix 8
AA8
A
465 469Right-handed 310
Helix 9
AA9
B
191 208Right-handed alpha
Helix 10
AB1
B
256 268Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6F9S. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
424 425anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 364first strand
Strand 2
A
387 390parallel
Strand 3
A
336 340parallel
Strand 4
A
403 408parallel
Strand 5
A
432 438parallel
Strand 6
A
309 315parallel
Strand 7
A
458 459parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il