Analysis of interatomic Contacts of Structural Units in PDB entry:
6FAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FAE entry

There are 2 chains in PDB entry 6FAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 398GLU 743
B
 ASN 12LEU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6FAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
398 416Right-handed alpha
Helix 2
AA2
A
416 427Right-handed alpha
Helix 3
AA3
A
433 444Right-handed alpha
Helix 4
AA4
A
448 457Right-handed alpha
Helix 5
AA5
A
461 474Right-handed alpha
Helix 6
AA6
A
481 493Right-handed alpha
Helix 7
AA7
A
498 517Right-handed alpha
Helix 8
AA8
A
517 523Right-handed alpha
Helix 9
AA9
A
527 546Right-handed alpha
Helix 10
AB1
A
550 554Right-handed 310
Helix 11
AB2
A
556 564Right-handed alpha
Helix 12
AB3
A
574 588Right-handed alpha
Helix 13
AB4
A
596 606Right-handed alpha
Helix 14
AB5
A
714 742Right-handed alpha
Helix 15
AB6
B
29 36Right-handed alpha
Helix 16
AB7
B
74 77Right-handed 310
Helix 17
AB8
B
78 83Right-handed alpha
Helix 18
AB9
B
96 98Right-handed 310
Helix 19
AC1
B
99 112Right-handed alpha
Helix 20
AC2
B
113 117Right-handed 310
Helix 21
AC3
B
135 143Right-handed alpha
Helix 22
AC4
B
144 148Right-handed 310
Helix 23
AC5
B
159 163Right-handed 310
Helix 24
AC6
B
165 177Right-handed alpha
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There are 3 sheets in PDB entry 6FAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 497first strand
Strand 2
B
50 51parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 608first strand
Strand 2
A
668 675parallel
Strand 3
A
652 658anti-parallel
Strand 4
A
643 649anti-parallel
Strand 5
A
621 629anti-parallel
Strand 6
A
706 711anti-parallel
Strand 7
A
692 697anti-parallel
Strand 8
A
679 684anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
61 67anti-parallel
Strand 3
B
16 23parallel
Strand 4
B
87 93parallel
Strand 5
B
120 126parallel
Strand 6
B
153 158parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il