Analysis of interatomic Contacts of Structural Units in PDB entry:
6FB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FB8 entry

There are 4 chains in PDB entry 6FB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 T 601 A 624
C
 T 501 A 524
A
 ASN 2ALA 155
B
 ASN 202ALA 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6FB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 20Right-handed alpha
Helix 2
AA2
A
51 63Right-handed alpha
Helix 3
AA3
A
80 92Right-handed alpha
Helix 4
AA4
A
93 95Right-handed 310
Helix 5
AA5
A
98 111Right-handed alpha
Helix 6
AA6
A
111 118Right-handed alpha
Helix 7
AA7
A
118 136Right-handed alpha
Helix 8
AA8
A
148 153Right-handed alpha
Helix 9
AA9
B
206 220Right-handed alpha
Helix 10
AB1
B
251 263Right-handed alpha
Helix 11
AB2
B
280 292Right-handed alpha
Helix 12
AB3
B
293 295Right-handed 310
Helix 13
AB4
B
298 311Right-handed alpha
Helix 14
AB5
B
311 316Right-handed alpha
Helix 15
AB6
B
318 336Right-handed alpha
Helix 16
AB7
B
345 353Right-handed alpha
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There are 2 sheets in PDB entry 6FB8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 29first strand
Strand 2
A
37 48anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
66 69anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 229first strand
Strand 2
B
237 248anti-parallel
Strand 3
B
273 278anti-parallel
Strand 4
B
266 270anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il