Analysis of interatomic Contacts of Structural Units in PDB entry:
6FBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FBM entry

There are 4 chains in PDB entry 6FBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 9	MET 529
B	GLN 9	MET 529
C	GLN 9	MET 529
D	GLN 9	MET 529

There are 81 helices in PDB entry 6FBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	19	Right-handed 310
Helix 2	AA2	A	31	33	Right-handed 310
Helix 3	AA3	A	80	89	Right-handed alpha
Helix 4	AA4	A	103	109	Right-handed alpha
Helix 5	AA5	A	110	116	Right-handed alpha
Helix 6	AA6	A	137	142	Right-handed alpha
Helix 7	AA7	A	143	145	Right-handed 310
Helix 8	AA8	A	146	155	Right-handed alpha
Helix 9	AA9	A	159	168	Right-handed alpha
Helix 10	AB1	A	189	192	Right-handed 310
Helix 11	AB2	A	197	210	Right-handed alpha
Helix 12	AB3	A	219	231	Right-handed alpha
Helix 13	AB4	A	245	251	Right-handed alpha
Helix 14	AB5	A	254	270	Right-handed alpha
Helix 15	AB6	A	284	287	Right-handed 310
Helix 16	AB7	A	289	299	Right-handed alpha
Helix 17	AB8	A	299	305	Right-handed alpha
Helix 18	AB9	A	306	309	Right-handed 310
Helix 19	AC1	A	494	501	Right-handed alpha
Helix 20	AC2	A	516	525	Right-handed alpha
Helix 21	AC3	B	15	19	Right-handed 310
Helix 22	AC4	B	31	33	Right-handed 310
Helix 23	AC5	B	80	89	Right-handed alpha
Helix 24	AC6	B	103	109	Right-handed alpha
Helix 25	AC7	B	110	116	Right-handed alpha
Helix 26	AC8	B	137	142	Right-handed alpha
Helix 27	AC9	B	143	145	Right-handed 310
Helix 28	AD1	B	146	155	Right-handed alpha
Helix 29	AD2	B	159	168	Right-handed alpha
Helix 30	AD3	B	189	192	Right-handed 310
Helix 31	AD4	B	197	210	Right-handed alpha
Helix 32	AD5	B	219	231	Right-handed alpha
Helix 33	AD6	B	245	251	Right-handed alpha
Helix 34	AD7	B	254	265	Right-handed alpha
Helix 35	AD8	B	265	270	Right-handed alpha
Helix 36	AD9	B	284	287	Right-handed 310
Helix 37	AE1	B	289	299	Right-handed alpha
Helix 38	AE2	B	299	305	Right-handed alpha
Helix 39	AE3	B	306	309	Right-handed 310
Helix 40	AE4	B	494	501	Right-handed alpha
Helix 41	AE5	B	516	525	Right-handed alpha
Helix 42	AE6	C	15	19	Right-handed 310
Helix 43	AE7	C	31	33	Right-handed 310
Helix 44	AE8	C	80	89	Right-handed alpha
Helix 45	AE9	C	103	109	Right-handed alpha
Helix 46	AF1	C	110	116	Right-handed alpha
Helix 47	AF2	C	137	142	Right-handed alpha
Helix 48	AF3	C	143	145	Right-handed 310
Helix 49	AF4	C	146	155	Right-handed alpha
Helix 50	AF5	C	159	168	Right-handed alpha
Helix 51	AF6	C	189	192	Right-handed 310
Helix 52	AF7	C	197	210	Right-handed alpha
Helix 53	AF8	C	219	231	Right-handed alpha
Helix 54	AF9	C	245	251	Right-handed alpha
Helix 55	AG1	C	254	270	Right-handed alpha
Helix 56	AG2	C	284	287	Right-handed 310
Helix 57	AG3	C	289	299	Right-handed alpha
Helix 58	AG4	C	299	305	Right-handed alpha
Helix 59	AG5	C	306	309	Right-handed 310
Helix 60	AG6	C	494	501	Right-handed alpha
Helix 61	AG7	C	515	525	Right-handed alpha
Helix 62	AG8	D	15	19	Right-handed 310
Helix 63	AG9	D	31	33	Right-handed 310
Helix 64	AH1	D	80	89	Right-handed alpha
Helix 65	AH2	D	103	109	Right-handed alpha
Helix 66	AH3	D	110	116	Right-handed alpha
Helix 67	AH4	D	137	142	Right-handed alpha
Helix 68	AH5	D	143	145	Right-handed 310
Helix 69	AH6	D	146	155	Right-handed alpha
Helix 70	AH7	D	159	168	Right-handed alpha
Helix 71	AH8	D	189	192	Right-handed 310
Helix 72	AH9	D	197	210	Right-handed alpha
Helix 73	AI1	D	219	231	Right-handed alpha
Helix 74	AI2	D	245	251	Right-handed alpha
Helix 75	AI3	D	254	270	Right-handed alpha
Helix 76	AI4	D	284	287	Right-handed 310
Helix 77	AI5	D	289	299	Right-handed alpha
Helix 78	AI6	D	299	305	Right-handed alpha
Helix 79	AI7	D	306	309	Right-handed 310
Helix 80	AI8	D	494	501	Right-handed alpha
Helix 81	AI9	D	516	525	Right-handed alpha

There are 40 sheets in PDB entry 6FBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	21	23	anti-parallel
Strand 3	A	170	172	anti-parallel
Strand 4	A	280	282	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	55	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	78	first strand
Strand 2	A	120	134	anti-parallel
Strand 3	A	174	187	anti-parallel
Strand 4	A	232	239	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	78	first strand
Strand 2	A	120	134	anti-parallel
Strand 3	A	174	187	anti-parallel
Strand 4	A	271	274	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	354	first strand
Strand 2	A	373	376	anti-parallel
Strand 3	A	318	321	anti-parallel
Strand 4	A	513	515	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	331	first strand
Strand 2	A	342	346	anti-parallel
Strand 3	A	358	360	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	384	first strand
Strand 2	A	439	441	anti-parallel
Strand 3	A	415	416	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	394	first strand
Strand 2	A	403	410	anti-parallel
Strand 3	A	421	426	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	447	first strand
Strand 2	A	506	508	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	457	first strand
Strand 2	A	468	473	anti-parallel
Strand 3	A	484	486	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	21	23	anti-parallel
Strand 3	B	170	172	anti-parallel
Strand 4	B	280	282	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	55	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	78	first strand
Strand 2	B	120	134	anti-parallel
Strand 3	B	174	187	anti-parallel
Strand 4	B	232	239	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	78	first strand
Strand 2	B	120	134	anti-parallel
Strand 3	B	174	187	anti-parallel
Strand 4	B	271	274	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	354	first strand
Strand 2	B	373	376	anti-parallel
Strand 3	B	318	321	anti-parallel
Strand 4	B	513	515	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	331	first strand
Strand 2	B	342	346	anti-parallel
Strand 3	B	358	360	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	384	first strand
Strand 2	B	439	441	anti-parallel
Strand 3	B	415	416	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	394	first strand
Strand 2	B	403	410	anti-parallel
Strand 3	B	421	426	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	447	first strand
Strand 2	B	506	508	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	457	first strand
Strand 2	B	468	473	anti-parallel
Strand 3	B	484	486	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	39	first strand
Strand 2	C	21	23	anti-parallel
Strand 3	C	170	172	anti-parallel
Strand 4	C	280	282	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	55	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	78	first strand
Strand 2	C	120	134	anti-parallel
Strand 3	C	174	187	anti-parallel
Strand 4	C	232	239	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	78	first strand
Strand 2	C	120	134	anti-parallel
Strand 3	C	174	187	anti-parallel
Strand 4	C	271	274	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	354	first strand
Strand 2	C	373	376	anti-parallel
Strand 3	C	318	321	anti-parallel
Strand 4	C	513	514	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	331	first strand
Strand 2	C	342	346	anti-parallel
Strand 3	C	358	360	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	384	first strand
Strand 2	C	439	441	anti-parallel
Strand 3	C	415	416	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	394	first strand
Strand 2	C	403	410	anti-parallel
Strand 3	C	421	426	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	447	first strand
Strand 2	C	506	508	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	450	457	first strand
Strand 2	C	468	473	anti-parallel
Strand 3	C	484	486	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	21	23	anti-parallel
Strand 3	D	170	172	anti-parallel
Strand 4	D	280	282	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	52	first strand
Strand 2	D	55	60	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	78	first strand
Strand 2	D	120	134	anti-parallel
Strand 3	D	174	187	anti-parallel
Strand 4	D	232	239	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	78	first strand
Strand 2	D	120	134	anti-parallel
Strand 3	D	174	187	anti-parallel
Strand 4	D	271	274	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	373	376	anti-parallel
Strand 3	D	318	321	anti-parallel
Strand 4	D	513	515	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	331	first strand
Strand 2	D	342	346	anti-parallel
Strand 3	D	358	360	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	384	first strand
Strand 2	D	439	441	anti-parallel
Strand 3	D	415	416	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	394	first strand
Strand 2	D	403	410	anti-parallel
Strand 3	D	421	426	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	447	first strand
Strand 2	D	506	508	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	450	457	first strand
Strand 2	D	468	473	anti-parallel
Strand 3	D	484	486	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FBM