Analysis of interatomic Contacts of Structural Units in PDB entry:
6FBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FBP entry

There are 2 chains in PDB entry 6FBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 16TYR 395
B
 GLY 16TYR 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6FBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 49Right-handed alpha
Helix 2
AA2
A
78 91Right-handed alpha
Helix 3
AA3
A
95 98Right-handed 310
Helix 4
AA4
A
114 122Right-handed alpha
Helix 5
AA5
A
126 130Right-handed 310
Helix 6
AA6
A
151 170Right-handed alpha
Helix 7
AA7
A
214 226Right-handed alpha
Helix 8
AA8
A
226 231Right-handed alpha
Helix 9
AA9
A
232 236Right-handed 310
Helix 10
AB1
A
289 308Right-handed alpha
Helix 11
AB2
A
341 353Right-handed alpha
Helix 12
AB3
A
356 365Right-handed alpha
Helix 13
AB4
A
370 376Right-handed 310
Helix 14
AB5
A
385 389Right-handed 310
Helix 15
AB6
B
29 49Right-handed alpha
Helix 16
AB7
B
78 91Right-handed alpha
Helix 17
AB8
B
95 98Right-handed 310
Helix 18
AB9
B
116 122Right-handed alpha
Helix 19
AC1
B
151 170Right-handed alpha
Helix 20
AC2
B
214 225Right-handed alpha
Helix 21
AC3
B
226 231Right-handed alpha
Helix 22
AC4
B
232 236Right-handed 310
Helix 23
AC5
B
253 257Right-handed 310
Helix 24
AC6
B
289 308Right-handed alpha
Helix 25
AC7
B
341 353Right-handed alpha
Helix 26
AC8
B
356 364Right-handed alpha
Helix 27
AC9
B
370 375Right-handed alpha
Helix 28
AD1
B
385 389Right-handed 310
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There are 9 sheets in PDB entry 6FBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 25first strand
Strand 2
A
176 191anti-parallel
Strand 3
A
194 209anti-parallel
Strand 4
A
241 244parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 111first strand
Strand 2
A
64 72parallel
Strand 3
A
53 61anti-parallel
Strand 4
A
259 261anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
99 100anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 143first strand
Strand 2
A
313 320anti-parallel
Strand 3
A
329 333anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 25first strand
Strand 2
B
176 191anti-parallel
Strand 3
B
194 209anti-parallel
Strand 4
B
241 244parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 108first strand
Strand 2
B
64 72parallel
Strand 3
B
111 113parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 108first strand
Strand 2
B
64 72parallel
Strand 3
B
53 61anti-parallel
Strand 4
B
260 261anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
99 100anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 143first strand
Strand 2
B
313 320anti-parallel
Strand 3
B
329 333anti-parallel
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