Analysis of interatomic Contacts of Structural Units in PDB entry:
6FD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FD2 entry

There are 2 chains in PDB entry 6FD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG 5ALA 457
A
 MET 4ALA 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6FD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 20Right-handed 310
Helix 2
AA2
B
43 54Right-handed alpha
Helix 3
AA3
B
55 57Right-handed 310
Helix 4
AA4
B
88 102Right-handed alpha
Helix 5
AA5
B
114 124Right-handed alpha
Helix 6
AA6
B
133 137Right-handed 310
Helix 7
AA7
B
138 144Right-handed alpha
Helix 8
AA8
B
170 174Right-handed 310
Helix 9
AA9
B
178 182Right-handed 310
Helix 10
AB1
B
208 213Right-handed 310
Helix 11
AB2
B
215 221Right-handed alpha
Helix 12
AB3
B
228 243Right-handed alpha
Helix 13
AB4
B
257 272Right-handed alpha
Helix 14
AB5
B
282 286Right-handed 310
Helix 15
AB6
B
287 298Right-handed alpha
Helix 16
AB7
B
310 315Right-handed alpha
Helix 17
AB8
B
323 337Right-handed alpha
Helix 18
AB9
B
353 368Right-handed alpha
Helix 19
AC1
B
370 372Right-handed 310
Helix 20
AC2
B
385 394Right-handed alpha
Helix 21
AC3
B
400 404Right-handed 310
Helix 22
AC4
B
417 437Right-handed alpha
Helix 23
AC5
B
438 456Right-handed alpha
Helix 24
AC6
A
18 20Right-handed 310
Helix 25
AC7
A
43 54Right-handed alpha
Helix 26
AC8
A
55 57Right-handed 310
Helix 27
AC9
A
65 69Right-handed alpha
Helix 28
AD1
A
88 101Right-handed alpha
Helix 29
AD2
A
114 124Right-handed alpha
Helix 30
AD3
A
133 136Right-handed 310
Helix 31
AD4
A
138 145Right-handed alpha
Helix 32
AD5
A
170 174Right-handed 310
Helix 33
AD6
A
178 182Right-handed 310
Helix 34
AD7
A
208 213Right-handed 310
Helix 35
AD8
A
215 221Right-handed alpha
Helix 36
AD9
A
228 243Right-handed alpha
Helix 37
AE1
A
257 272Right-handed alpha
Helix 38
AE2
A
282 286Right-handed 310
Helix 39
AE3
A
287 297Right-handed alpha
Helix 40
AE4
A
310 315Right-handed alpha
Helix 41
AE5
A
323 337Right-handed alpha
Helix 42
AE6
A
353 368Right-handed alpha
Helix 43
AE7
A
370 372Right-handed 310
Helix 44
AE8
A
385 394Right-handed alpha
Helix 45
AE9
A
400 404Right-handed 310
Helix 46
AF1
A
417 437Right-handed alpha
Helix 47
AF2
A
438 454Right-handed alpha
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There are 8 sheets in PDB entry 6FD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 64first strand
Strand 2
B
8 13parallel
Strand 3
B
79 83parallel
Strand 4
B
105 109parallel
Strand 5
B
130 131parallel
Strand 6
B
152 153anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
32 33anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 200first strand
Strand 2
B
246 249parallel
Strand 3
B
277 280parallel
Strand 4
B
299 307parallel
Strand 5
B
340 347parallel
Strand 6
B
374 378parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
B
225 226anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
8 13parallel
Strand 3
A
79 84parallel
Strand 4
A
105 110parallel
Strand 5
A
129 131parallel
Strand 6
A
152 153anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
32 33anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 200first strand
Strand 2
A
246 249parallel
Strand 3
A
277 280parallel
Strand 4
A
299 307parallel
Strand 5
A
340 347parallel
Strand 6
A
374 378parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
225 226anti-parallel
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