Analysis of interatomic Contacts of Structural Units in PDB entry:
6FD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FD8 entry

There are 2 chains in PDB entry 6FD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4GLU 177
B
 GLY 4GLU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6FD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 73Right-handed 310
Helix 2
AA2
A
116 122Right-handed alpha
Helix 3
AA3
A
158 162Right-handed 310
Helix 4
AA4
B
12 16Right-handed 310
Helix 5
AA5
B
68 73Right-handed 310
Helix 6
AA6
B
116 122Right-handed alpha
Helix 7
AA7
B
158 163Right-handed 310
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There are 8 sheets in PDB entry 6FD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 22first strand
Strand 2
A
7 12anti-parallel
Strand 3
A
38 41anti-parallel
Strand 4
A
64 66anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 61first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
81 84anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 110first strand
Strand 2
A
94 100anti-parallel
Strand 3
A
128 133anti-parallel
Strand 4
A
155 156anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
136 139anti-parallel
Strand 3
A
171 174anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 22first strand
Strand 2
B
7 10anti-parallel
Strand 3
B
38 41anti-parallel
Strand 4
B
64 66anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 61first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
81 84anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 110first strand
Strand 2
B
94 100anti-parallel
Strand 3
B
128 133anti-parallel
Strand 4
B
155 156anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 151first strand
Strand 2
B
136 141anti-parallel
Strand 3
B
171 174anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il