Analysis of interatomic Contacts of Structural Units in PDB entry:
6FDF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FDF entry

There are 4 chains in PDB entry 6FDF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 6	PHE 330
B	LYS 5	PHE 330
C	ARG 6	PHE 330
D	ARG 6	GLN 273

There are 82 helices in PDB entry 6FDF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	26	Right-handed alpha
Helix 2	AA2	A	39	51	Right-handed alpha
Helix 3	AA3	A	58	62	Right-handed 310
Helix 4	AA4	A	63	71	Right-handed alpha
Helix 5	AA5	A	98	108	Right-handed alpha
Helix 6	AA6	A	109	111	Right-handed 310
Helix 7	AA7	A	125	128	Right-handed 310
Helix 8	AA8	A	129	142	Right-handed alpha
Helix 9	AA9	A	152	156	Right-handed 310
Helix 10	AB1	A	178	186	Right-handed 310
Helix 11	AB2	A	197	201	Right-handed 310
Helix 12	AB3	A	208	212	Right-handed 310
Helix 13	AB4	A	214	222	Right-handed alpha
Helix 14	AB5	A	223	225	Right-handed 310
Helix 15	AB6	A	260	269	Right-handed alpha
Helix 16	AB7	A	270	272	Right-handed 310
Helix 17	AB8	A	278	286	Right-handed alpha
Helix 18	AB9	A	300	310	Right-handed alpha
Helix 19	AC1	A	313	325	Right-handed alpha
Helix 20	AC2	A	326	329	Right-handed 310
Helix 21	AC3	B	17	26	Right-handed alpha
Helix 22	AC4	B	39	51	Right-handed alpha
Helix 23	AC5	B	58	62	Right-handed 310
Helix 24	AC6	B	63	71	Right-handed alpha
Helix 25	AC7	B	98	108	Right-handed alpha
Helix 26	AC8	B	109	111	Right-handed 310
Helix 27	AC9	B	125	128	Right-handed 310
Helix 28	AD1	B	129	142	Right-handed alpha
Helix 29	AD2	B	152	156	Right-handed 310
Helix 30	AD3	B	178	185	Right-handed 310
Helix 31	AD4	B	197	202	Right-handed 310
Helix 32	AD5	B	207	212	Right-handed 310
Helix 33	AD6	B	214	222	Right-handed alpha
Helix 34	AD7	B	223	225	Right-handed 310
Helix 35	AD8	B	260	269	Right-handed alpha
Helix 36	AD9	B	270	272	Right-handed 310
Helix 37	AE1	B	278	286	Right-handed alpha
Helix 38	AE2	B	300	310	Right-handed alpha
Helix 39	AE3	B	313	325	Right-handed alpha
Helix 40	AE4	B	326	329	Right-handed 310
Helix 41	AE5	C	17	26	Right-handed alpha
Helix 42	AE6	C	39	51	Right-handed alpha
Helix 43	AE7	C	58	62	Right-handed 310
Helix 44	AE8	C	63	71	Right-handed alpha
Helix 45	AE9	C	98	108	Right-handed alpha
Helix 46	AF1	C	109	111	Right-handed 310
Helix 47	AF2	C	125	128	Right-handed 310
Helix 48	AF3	C	129	142	Right-handed alpha
Helix 49	AF4	C	152	156	Right-handed 310
Helix 50	AF5	C	178	186	Right-handed 310
Helix 51	AF6	C	197	202	Right-handed 310
Helix 52	AF7	C	208	212	Right-handed 310
Helix 53	AF8	C	214	222	Right-handed alpha
Helix 54	AF9	C	223	225	Right-handed 310
Helix 55	AG1	C	260	269	Right-handed alpha
Helix 56	AG2	C	270	272	Right-handed 310
Helix 57	AG3	C	278	286	Right-handed alpha
Helix 58	AG4	C	300	310	Right-handed alpha
Helix 59	AG5	C	313	325	Right-handed alpha
Helix 60	AG6	C	326	329	Right-handed 310
Helix 61	AG7	D	17	26	Right-handed alpha
Helix 62	AG8	D	39	51	Right-handed alpha
Helix 63	AG9	D	58	62	Right-handed 310
Helix 64	AH1	D	63	71	Right-handed alpha
Helix 65	AH2	D	95	97	Right-handed 310
Helix 66	AH3	D	98	108	Right-handed alpha
Helix 67	AH4	D	109	111	Right-handed 310
Helix 68	AH5	D	125	128	Right-handed 310
Helix 69	AH6	D	129	142	Right-handed alpha
Helix 70	AH7	D	152	157	Right-handed 310
Helix 71	AH8	D	178	181	Right-handed 310
Helix 72	AH9	D	182	187	Right-handed alpha
Helix 73	AI1	D	197	202	Right-handed 310
Helix 74	AI2	D	208	212	Right-handed 310
Helix 75	AI3	D	214	222	Right-handed alpha
Helix 76	AI4	D	223	225	Right-handed 310
Helix 77	AI5	D	260	269	Right-handed alpha
Helix 78	AI6	D	270	272	Right-handed 310
Helix 79	AI7	D	278	286	Right-handed alpha
Helix 80	AI8	D	300	310	Right-handed alpha
Helix 81	AI9	D	313	325	Right-handed alpha
Helix 82	AJ1	D	326	329	Right-handed 310

There are 8 sheets in PDB entry 6FDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	30	37	parallel
Strand 3	A	7	12	parallel
Strand 4	A	74	77	parallel
Strand 5	A	117	123	parallel
Strand 6	A	164	171	anti-parallel
Strand 7	A	144	151	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	252	254	parallel
Strand 3	A	274	275	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	30	36	parallel
Strand 3	B	7	12	parallel
Strand 4	B	74	77	parallel
Strand 5	B	117	123	parallel
Strand 6	B	164	171	anti-parallel
Strand 7	B	144	151	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	252	254	parallel
Strand 3	B	274	275	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	30	36	parallel
Strand 3	C	7	12	parallel
Strand 4	C	74	77	parallel
Strand 5	C	117	123	parallel
Strand 6	C	164	171	anti-parallel
Strand 7	C	144	151	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	228	first strand
Strand 2	C	252	254	parallel
Strand 3	C	274	275	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	56	first strand
Strand 2	D	30	37	parallel
Strand 3	D	7	12	parallel
Strand 4	D	74	77	parallel
Strand 5	D	117	123	parallel
Strand 6	D	164	171	anti-parallel
Strand 7	D	144	151	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	228	first strand
Strand 2	D	252	254	parallel
Strand 3	D	274	275	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FDF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FDF