Analysis of interatomic Contacts of Structural Units in PDB entry:
6FDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FDL entry

There are 2 chains in PDB entry 6FDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 349HIS 502
B
 LEU 349PRO 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6FDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
369 382Right-handed alpha
Helix 2
AA2
A
400 410Right-handed alpha
Helix 3
AA3
A
423 439Right-handed alpha
Helix 4
AA4
A
452 454Right-handed 310
Helix 5
AA5
A
455 465Right-handed alpha
Helix 6
AA6
A
481 485Right-handed alpha
Helix 7
AA7
A
492 497Right-handed alpha
Helix 8
AA8
B
369 382Right-handed alpha
Helix 9
AA9
B
395 399Right-handed 310
Helix 10
AB1
B
400 410Right-handed alpha
Helix 11
AB2
B
424 440Right-handed alpha
Helix 12
AB3
B
452 454Right-handed 310
Helix 13
AB4
B
455 465Right-handed alpha
Helix 14
AB5
B
479 485Right-handed alpha
Helix 15
AB6
B
493 496Right-handed 310
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There are 2 sheets in PDB entry 6FDL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 416first strand
Strand 2
A
385 394parallel
Strand 3
A
351 358parallel
Strand 4
A
445 449parallel
Strand 5
A
469 474parallel
Strand 6
A
488 491parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 416first strand
Strand 2
B
385 394parallel
Strand 3
B
351 358parallel
Strand 4
B
445 449parallel
Strand 5
B
469 474parallel
Strand 6
B
488 491parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il