Analysis of interatomic Contacts of Structural Units in PDB entry:
6FDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FDQ entry

There are 2 chains in PDB entry 6FDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 163ALA 401
B
 ARG 155ALA 401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6FDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
167 182Right-handed alpha
Helix 2
AA2
A
198 215Right-handed alpha
Helix 3
AA3
A
228 239Right-handed alpha
Helix 4
AA4
A
254 268Right-handed alpha
Helix 5
AA5
A
300 319Right-handed alpha
Helix 6
AA6
A
344 359Right-handed alpha
Helix 7
AA7
A
364 368Right-handed 310
Helix 8
AA8
A
371 391Right-handed alpha
Helix 9
AA9
B
155 157Right-handed 310
Helix 10
AB1
B
158 163Right-handed alpha
Helix 11
AB2
B
167 182Right-handed alpha
Helix 12
AB3
B
198 215Right-handed alpha
Helix 13
AB4
B
228 239Right-handed alpha
Helix 14
AB5
B
254 268Right-handed alpha
Helix 15
AB6
B
300 319Right-handed alpha
Helix 16
AB7
B
344 359Right-handed alpha
Helix 17
AB8
B
364 368Right-handed 310
Helix 18
AB9
B
371 391Right-handed alpha
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There are 2 sheets in PDB entry 6FDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 248first strand
Strand 2
A
275 282anti-parallel
Strand 3
A
287 291anti-parallel
Strand 4
A
328 331parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 248first strand
Strand 2
B
275 282anti-parallel
Strand 3
B
287 291anti-parallel
Strand 4
B
328 331parallel
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