Analysis of interatomic Contacts of Structural Units in PDB entry:
6FFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FFJ entry

There are 4 chains in PDB entry 6FFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	LEU 505
C	GLN 1	LYS 506
E	GLN 1	LYS 506
G	VAL 2	LYS 506

There are 16 helices in PDB entry 6FFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	87	91	Right-handed 310
Helix 4	AA4	A	478	482	Right-handed 310
Helix 5	AA5	C	28	32	Right-handed 310
Helix 6	AA6	C	62	65	Right-handed 310
Helix 7	AA7	C	87	91	Right-handed 310
Helix 8	AA8	C	478	482	Right-handed 310
Helix 9	AA9	E	28	32	Right-handed 310
Helix 10	AB1	E	62	65	Right-handed 310
Helix 11	AB2	E	87	91	Right-handed 310
Helix 12	AB3	E	478	482	Right-handed 310
Helix 13	AB4	G	28	32	Right-handed 310
Helix 14	AB5	G	62	65	Right-handed 310
Helix 15	AB6	G	87	91	Right-handed 310
Helix 16	AB7	G	478	482	Right-handed 310

There are 24 sheets in PDB entry 6FFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	119	123	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	119	123	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	112	115	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	406	first strand
Strand 2	A	418	424	anti-parallel
Strand 3	A	469	474	anti-parallel
Strand 4	A	461	466	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	411	first strand
Strand 2	A	501	504	parallel
Strand 3	A	483	489	anti-parallel
Strand 4	A	432	437	anti-parallel
Strand 5	A	443	448	anti-parallel
Strand 6	A	452	453	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	411	first strand
Strand 2	A	501	504	parallel
Strand 3	A	483	489	anti-parallel
Strand 4	A	496	497	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	119	123	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	112	115	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	406	first strand
Strand 2	C	418	424	anti-parallel
Strand 3	C	469	474	anti-parallel
Strand 4	C	461	466	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	501	505	parallel
Strand 3	C	483	489	anti-parallel
Strand 4	C	432	437	anti-parallel
Strand 5	C	443	448	anti-parallel
Strand 6	C	452	453	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	501	505	parallel
Strand 3	C	483	489	anti-parallel
Strand 4	C	496	497	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	119	123	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	119	123	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	112	115	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	403	406	first strand
Strand 2	E	418	424	anti-parallel
Strand 3	E	469	474	anti-parallel
Strand 4	E	461	466	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	409	412	first strand
Strand 2	E	501	505	parallel
Strand 3	E	483	489	anti-parallel
Strand 4	E	432	437	anti-parallel
Strand 5	E	443	448	anti-parallel
Strand 6	E	452	453	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	409	412	first strand
Strand 2	E	501	505	parallel
Strand 3	E	483	489	anti-parallel
Strand 4	E	496	497	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	119	123	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	119	123	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	112	115	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	403	406	first strand
Strand 2	G	418	424	anti-parallel
Strand 3	G	469	474	anti-parallel
Strand 4	G	461	466	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	409	412	first strand
Strand 2	G	501	505	parallel
Strand 3	G	484	489	anti-parallel
Strand 4	G	432	437	anti-parallel
Strand 5	G	443	448	anti-parallel
Strand 6	G	452	453	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	409	412	first strand
Strand 2	G	501	505	parallel
Strand 3	G	484	489	anti-parallel
Strand 4	G	496	497	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FFJ