Analysis of interatomic Contacts of Structural Units in PDB entry:
6FFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FFX entry

There are 4 chains in PDB entry 6FFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 346
B	MET 1	THR 346
C	MET 1	THR 346
D	MET 1	THR 346

There are 60 helices in PDB entry 6FFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	47	Right-handed alpha
Helix 2	AA2	A	95	100	Right-handed alpha
Helix 3	AA3	A	101	106	Right-handed 310
Helix 4	AA4	A	108	113	Right-handed alpha
Helix 5	AA5	A	133	135	Right-handed 310
Helix 6	AA6	A	144	149	Right-handed alpha
Helix 7	AA7	A	150	153	Right-handed 310
Helix 8	AA8	A	155	164	Right-handed alpha
Helix 9	AA9	A	165	169	Right-handed 310
Helix 10	AB1	A	183	195	Right-handed alpha
Helix 11	AB2	A	205	215	Right-handed alpha
Helix 12	AB3	A	226	235	Right-handed alpha
Helix 13	AB4	A	249	259	Right-handed alpha
Helix 14	AB5	A	297	310	Right-handed alpha
Helix 15	AB6	A	324	334	Right-handed alpha
Helix 16	AB7	B	39	47	Right-handed alpha
Helix 17	AB8	B	95	100	Right-handed alpha
Helix 18	AB9	B	101	106	Right-handed 310
Helix 19	AC1	B	108	113	Right-handed alpha
Helix 20	AC2	B	133	135	Right-handed 310
Helix 21	AC3	B	144	149	Right-handed alpha
Helix 22	AC4	B	150	153	Right-handed 310
Helix 23	AC5	B	155	164	Right-handed alpha
Helix 24	AC6	B	165	169	Right-handed 310
Helix 25	AC7	B	183	195	Right-handed alpha
Helix 26	AC8	B	205	215	Right-handed alpha
Helix 27	AC9	B	226	235	Right-handed alpha
Helix 28	AD1	B	249	259	Right-handed alpha
Helix 29	AD2	B	297	310	Right-handed alpha
Helix 30	AD3	B	324	335	Right-handed alpha
Helix 31	AD4	C	39	47	Right-handed alpha
Helix 32	AD5	C	95	100	Right-handed alpha
Helix 33	AD6	C	101	106	Right-handed 310
Helix 34	AD7	C	108	113	Right-handed alpha
Helix 35	AD8	C	133	135	Right-handed 310
Helix 36	AD9	C	144	149	Right-handed alpha
Helix 37	AE1	C	150	153	Right-handed 310
Helix 38	AE2	C	155	164	Right-handed alpha
Helix 39	AE3	C	165	169	Right-handed 310
Helix 40	AE4	C	183	195	Right-handed alpha
Helix 41	AE5	C	205	215	Right-handed alpha
Helix 42	AE6	C	226	235	Right-handed alpha
Helix 43	AE7	C	249	259	Right-handed alpha
Helix 44	AE8	C	297	310	Right-handed alpha
Helix 45	AE9	C	324	335	Right-handed alpha
Helix 46	AF1	D	39	47	Right-handed alpha
Helix 47	AF2	D	95	100	Right-handed alpha
Helix 48	AF3	D	101	106	Right-handed 310
Helix 49	AF4	D	108	113	Right-handed alpha
Helix 50	AF5	D	133	135	Right-handed 310
Helix 51	AF6	D	144	149	Right-handed alpha
Helix 52	AF7	D	150	153	Right-handed 310
Helix 53	AF8	D	155	164	Right-handed alpha
Helix 54	AF9	D	165	169	Right-handed 310
Helix 55	AG1	D	183	195	Right-handed alpha
Helix 56	AG2	D	205	215	Right-handed alpha
Helix 57	AG3	D	226	235	Right-handed alpha
Helix 58	AG4	D	249	259	Right-handed alpha
Helix 59	AG5	D	297	310	Right-handed alpha
Helix 60	AG6	D	324	335	Right-handed alpha

There are 18 sheets in PDB entry 6FFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	2	6	anti-parallel
Strand 3	A	58	59	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	28	37	anti-parallel
Strand 3	A	63	71	anti-parallel
Strand 4	A	83	86	anti-parallel
Strand 5	A	137	139	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	28	37	anti-parallel
Strand 3	A	340	343	anti-parallel
Strand 4	A	317	320	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	222	first strand
Strand 2	A	198	203	parallel
Strand 3	A	174	178	parallel
Strand 4	A	240	245	parallel
Strand 5	A	260	268	parallel
Strand 6	A	289	291	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	279	first strand
Strand 2	D	277	279	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	2	6	anti-parallel
Strand 3	B	58	59	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	28	37	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	83	86	anti-parallel
Strand 5	B	137	139	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	28	37	anti-parallel
Strand 3	B	340	343	anti-parallel
Strand 4	B	317	320	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	222	first strand
Strand 2	B	198	203	parallel
Strand 3	B	174	178	parallel
Strand 4	B	240	245	parallel
Strand 5	B	260	268	parallel
Strand 6	B	289	291	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	C	277	279	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	58	59	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	28	37	anti-parallel
Strand 3	C	63	71	anti-parallel
Strand 4	C	83	86	anti-parallel
Strand 5	C	137	139	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	28	37	anti-parallel
Strand 3	C	340	343	anti-parallel
Strand 4	C	317	320	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	222	first strand
Strand 2	C	198	203	parallel
Strand 3	C	174	178	parallel
Strand 4	C	240	245	parallel
Strand 5	C	260	268	parallel
Strand 6	C	289	291	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	17	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	58	59	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	28	37	anti-parallel
Strand 3	D	63	71	anti-parallel
Strand 4	D	83	86	anti-parallel
Strand 5	D	137	139	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	28	37	anti-parallel
Strand 3	D	340	343	anti-parallel
Strand 4	D	317	320	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	222	first strand
Strand 2	D	198	203	parallel
Strand 3	D	174	178	parallel
Strand 4	D	240	245	parallel
Strand 5	D	260	268	parallel
Strand 6	D	289	291	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FFX