Analysis of interatomic Contacts of Structural Units in PDB entry:
6FFY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FFY entry

There are 3 chains in PDB entry 6FFY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 131	ASP 1066
B	HIS 129	THR 238
C	PHE 128	THR 238

There are 5 helices in PDB entry 6FFY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	702	704	Right-handed 310
Helix 2	AA2	A	830	835	Right-handed alpha
Helix 3	AA3	A	968	974	Right-handed 310
Helix 4	AA4	A	977	997	Right-handed alpha
Helix 5	AA5	A	1033	1046	Right-handed alpha

There are 28 sheets in PDB entry 6FFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	140	first strand
Strand 2	A	634	640	anti-parallel
Strand 3	A	621	627	anti-parallel
Strand 4	A	610	613	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	162	168	anti-parallel
Strand 3	A	178	184	anti-parallel
Strand 4	A	191	194	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	209	first strand
Strand 2	A	219	224	anti-parallel
Strand 3	A	229	234	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	255	first strand
Strand 2	A	263	267	anti-parallel
Strand 3	A	271	275	anti-parallel
Strand 4	A	283	286	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	296	first strand
Strand 2	A	308	314	anti-parallel
Strand 3	A	318	324	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	358	first strand
Strand 2	A	365	370	anti-parallel
Strand 3	A	376	377	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	393	first strand
Strand 2	A	400	404	anti-parallel
Strand 3	A	411	416	anti-parallel
Strand 4	A	425	434	anti-parallel
Strand 5	A	442	443	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	448	first strand
Strand 2	A	454	461	anti-parallel
Strand 3	A	464	470	anti-parallel
Strand 4	A	478	479	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	503	first strand
Strand 2	A	527	534	anti-parallel
Strand 3	A	519	520	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	503	first strand
Strand 2	A	527	534	anti-parallel
Strand 3	A	543	547	anti-parallel
Strand 4	A	554	559	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	567	first strand
Strand 2	A	572	577	anti-parallel
Strand 3	A	587	589	anti-parallel
Strand 4	A	597	598	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	658	first strand
Strand 2	A	671	678	anti-parallel
Strand 3	A	667	668	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	658	first strand
Strand 2	A	671	678	anti-parallel
Strand 3	A	695	698	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	708	first strand
Strand 2	A	752	754	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	714	first strand
Strand 2	A	725	727	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	746	747	first strand
Strand 2	A	773	774	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	787	first strand
Strand 2	A	800	805	anti-parallel
Strand 3	A	838	840	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	825	829	first strand
Strand 2	A	815	819	anti-parallel
Strand 3	A	846	855	anti-parallel
Strand 4	A	860	869	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	876	879	first strand
Strand 2	A	890	896	anti-parallel
Strand 3	A	923	926	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	883	885	first strand
Strand 2	A	947	956	parallel
Strand 3	A	932	940	anti-parallel
Strand 4	A	906	909	anti-parallel
Strand 5	A	917	919	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1003	1006	first strand
Strand 2	A	1014	1020	anti-parallel
Strand 3	A	959	966	anti-parallel
Strand 4	A	1058	1064	anti-parallel
Strand 5	A	1050	1055	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	C	218	235	anti-parallel
Strand 3	C	197	213	anti-parallel
Strand 4	C	156	159	anti-parallel
Strand 5	C	148	150	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	143	first strand
Strand 2	B	174	179	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	150	first strand
Strand 2	B	156	159	anti-parallel
Strand 3	B	206	213	anti-parallel
Strand 4	B	218	225	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	168	171	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	203	first strand
Strand 2	B	229	235	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	143	first strand
Strand 2	C	174	179	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	168	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FFY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FFY