Analysis of interatomic Contacts of Structural Units in PDB entry:
6FI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FI8 entry

There are 12 chains in PDB entry 6FI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 6GLN 132
B
 LEU 6ASN 133
C
 A 16 A 44
D
 A 16 A 44
E
 A -5 C 0
F
 A -5 C 0
G
 LEU 6ASN 133
H
 LEU 6ASN 130
I
 A 16 A 44
J
 A 16 DA 44
K
 A -5 C 0
L
 A -5 C 0
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 6FI8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
33 51Right-handed alpha
Helix 3
AA3
A
76 96Right-handed alpha
Helix 4
AA4
A
97 100Right-handed 310
Helix 5
AA5
A
120 128Right-handed alpha
Helix 6
AA6
B
25 29Right-handed 310
Helix 7
AA7
B
33 51Right-handed alpha
Helix 8
AA8
B
76 96Right-handed alpha
Helix 9
AA9
B
96 102Right-handed alpha
Helix 10
AB1
B
120 130Right-handed alpha
Helix 11
AB2
G
25 29Right-handed 310
Helix 12
AB3
G
33 51Right-handed alpha
Helix 13
AB4
G
76 96Right-handed alpha
Helix 14
AB5
G
96 102Right-handed alpha
Helix 15
AB6
G
120 128Right-handed alpha
Helix 16
AB7
H
25 29Right-handed 310
Helix 17
AB8
H
33 51Right-handed alpha
Helix 18
AB9
H
76 96Right-handed alpha
Helix 19
AC1
H
96 102Right-handed alpha
Helix 20
AC2
H
120 129Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6FI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
13 16anti-parallel
Strand 3
B
111 116parallel
Strand 4
B
18 23anti-parallel
Strand 5
B
65 70anti-parallel
Strand 6
B
54 60anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 60first strand
Strand 2
A
65 70anti-parallel
Strand 3
A
18 23anti-parallel
Strand 4
A
111 116anti-parallel
Strand 5
B
13 16parallel
Strand 6
B
8 9anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
8 9first strand
Strand 2
G
13 16anti-parallel
Strand 3
H
111 116parallel
Strand 4
H
18 23anti-parallel
Strand 5
H
65 70anti-parallel
Strand 6
H
54 60anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
54 60first strand
Strand 2
G
65 70anti-parallel
Strand 3
G
18 23anti-parallel
Strand 4
G
111 116anti-parallel
Strand 5
H
13 16parallel
Strand 6
H
8 9anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il