Analysis of interatomic Contacts of Structural Units in PDB entry:
6FIJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FIJ entry

There is 1 chain in PDB entry 6FIJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	ILE 682

There are122 helices in PDB entry 6FIJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	29	Right-handed alpha
Helix 2	AA2	A	32	51	Right-handed alpha
Helix 3	AA3	A	54	60	Right-handed alpha
Helix 4	AA4	A	66	68	Right-handed 310
Helix 5	AA5	A	69	77	Right-handed alpha
Helix 6	AA6	A	80	101	Right-handed alpha
Helix 7	AA7	A	119	130	Right-handed alpha
Helix 8	AA8	A	133	163	Right-handed alpha
Helix 9	AA9	A	184	200	Right-handed alpha
Helix 10	AB1	A	202	206	Right-handed 310
Helix 11	AB2	A	223	232	Right-handed alpha
Helix 12	AB3	A	256	264	Right-handed alpha
Helix 13	AB4	A	265	267	Right-handed 310
Helix 14	AB5	A	294	308	Right-handed alpha
Helix 15	AB6	A	312	314	Right-handed 310
Helix 16	AB7	A	315	327	Right-handed alpha
Helix 17	AB8	A	341	343	Right-handed 310
Helix 18	AB9	A	344	351	Right-handed alpha
Helix 19	AC1	A	398	408	Right-handed alpha
Helix 20	AC2	A	422	427	Right-handed alpha
Helix 21	AC3	A	462	466	Right-handed 310
Helix 22	AC4	A	467	484	Right-handed alpha
Helix 23	AC5	A	495	497	Right-handed 310
Helix 24	AC6	A	509	514	Right-handed alpha
Helix 25	AC7	A	515	519	Right-handed 310
Helix 26	AC8	A	522	528	Right-handed alpha
Helix 27	AC9	A	530	541	Right-handed alpha
Helix 28	AD1	A	551	553	Right-handed 310
Helix 29	AD2	A	554	570	Right-handed alpha
Helix 30	AD3	A	585	595	Right-handed alpha
Helix 31	AD4	A	628	634	Right-handed alpha
Helix 32	AD5	A	660	676	Right-handed alpha
Helix 33	AD6	A	678	680	Right-handed 310
Helix 34	AD7	A	692	708	Right-handed alpha
Helix 35	AD8	A	727	732	Right-handed alpha
Helix 36	AD9	A	734	736	Right-handed 310
Helix 37	AE1	A	737	753	Right-handed alpha
Helix 38	AE2	A	772	775	Right-handed 310
Helix 39	AE3	A	838	856	Right-handed alpha
Helix 40	AE4	A	862	874	Right-handed alpha
Helix 41	AE5	A	888	905	Right-handed alpha
Helix 42	AE6	A	925	929	Right-handed 310
Helix 43	AE7	A	934	941	Right-handed alpha
Helix 44	AE8	A	941	958	Right-handed alpha
Helix 45	AE9	A	963	969	Right-handed alpha
Helix 46	AF1	A	970	974	Right-handed 310
Helix 47	AF2	A	977	999	Right-handed alpha
Helix 48	AF3	A	1011	1020	Right-handed alpha
Helix 49	AF4	A	1024	1043	Right-handed alpha
Helix 50	AF5	A	1056	1064	Right-handed alpha
Helix 51	AF6	A	1089	1102	Right-handed alpha
Helix 52	AF7	A	1117	1122	Right-handed 310
Helix 53	AF8	A	1123	1133	Right-handed alpha
Helix 54	AF9	A	1154	1158	Right-handed 310
Helix 55	AG1	A	1159	1169	Right-handed alpha
Helix 56	AG2	A	1173	1183	Right-handed alpha
Helix 57	AG3	A	1200	1210	Right-handed alpha
Helix 58	AG4	A	1224	1239	Right-handed alpha
Helix 59	AG5	A	1244	1251	Right-handed alpha
Helix 60	AG6	A	1252	1256	Right-handed 310
Helix 61	AG7	A	1278	1283	Right-handed 310
Helix 62	AG8	B	19	28	Right-handed alpha
Helix 63	AG9	B	32	51	Right-handed alpha
Helix 64	AH1	B	54	60	Right-handed alpha
Helix 65	AH2	B	66	68	Right-handed 310
Helix 66	AH3	B	69	77	Right-handed alpha
Helix 67	AH4	B	80	101	Right-handed alpha
Helix 68	AH5	B	119	130	Right-handed alpha
Helix 69	AH6	B	133	163	Right-handed alpha
Helix 70	AH7	B	184	199	Right-handed alpha
Helix 71	AH8	B	202	206	Right-handed 310
Helix 72	AH9	B	223	232	Right-handed alpha
Helix 73	AI1	B	256	264	Right-handed alpha
Helix 74	AI2	B	265	267	Right-handed 310
Helix 75	AI3	B	294	308	Right-handed alpha
Helix 76	AI4	B	312	314	Right-handed 310
Helix 77	AI5	B	315	327	Right-handed alpha
Helix 78	AI6	B	341	343	Right-handed 310
Helix 79	AI7	B	344	351	Right-handed alpha
Helix 80	AI8	B	398	408	Right-handed alpha
Helix 81	AI9	B	422	427	Right-handed alpha
Helix 82	AJ1	B	462	466	Right-handed 310
Helix 83	AJ2	B	467	484	Right-handed alpha
Helix 84	AJ3	B	491	497	Right-handed 310
Helix 85	AJ4	B	509	514	Right-handed alpha
Helix 86	AJ5	B	515	519	Right-handed 310
Helix 87	AJ6	B	522	528	Right-handed alpha
Helix 88	AJ7	B	530	540	Right-handed alpha
Helix 89	AJ8	B	551	553	Right-handed 310
Helix 90	AJ9	B	554	569	Right-handed alpha
Helix 91	AK1	B	585	595	Right-handed alpha
Helix 92	AK2	B	628	634	Right-handed alpha
Helix 93	AK3	B	660	676	Right-handed alpha
Helix 94	AK4	B	678	682	Right-handed 310
Helix 95	AK5	B	692	708	Right-handed alpha
Helix 96	AK6	B	727	732	Right-handed alpha
Helix 97	AK7	B	734	736	Right-handed 310
Helix 98	AK8	B	737	753	Right-handed alpha
Helix 99	AK9	B	772	775	Right-handed 310
Helix 100	AL1	B	838	856	Right-handed alpha
Helix 101	AL2	B	862	874	Right-handed alpha
Helix 102	AL3	B	888	905	Right-handed alpha
Helix 103	AL4	B	925	929	Right-handed 310
Helix 104	AL5	B	934	941	Right-handed alpha
Helix 105	AL6	B	941	958	Right-handed alpha
Helix 106	AL7	B	963	970	Right-handed alpha
Helix 107	AL8	B	971	974	Right-handed 310
Helix 108	AL9	B	977	999	Right-handed alpha
Helix 109	AM1	B	1011	1020	Right-handed alpha
Helix 110	AM2	B	1024	1043	Right-handed alpha
Helix 111	AM3	B	1056	1064	Right-handed alpha
Helix 112	AM4	B	1089	1102	Right-handed alpha
Helix 113	AM5	B	1117	1122	Right-handed 310
Helix 114	AM6	B	1123	1134	Right-handed alpha
Helix 115	AM7	B	1154	1158	Right-handed 310
Helix 116	AM8	B	1159	1169	Right-handed alpha
Helix 117	AM9	B	1173	1183	Right-handed alpha
Helix 118	AN1	B	1200	1210	Right-handed alpha
Helix 119	AN2	B	1224	1240	Right-handed alpha
Helix 120	AN3	B	1244	1249	Right-handed alpha
Helix 121	AN4	B	1252	1256	Right-handed 310
Helix 122	AN5	B	1278	1283	Right-handed 310

There are 20 sheets in PDB entry 6FIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	117	first strand
Strand 2	A	6	12	parallel
Strand 3	A	331	337	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	212	first strand
Strand 2	A	217	221	anti-parallel
Strand 3	A	177	181	anti-parallel
Strand 4	A	239	242	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	289	290	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	549	first strand
Strand 2	A	499	504	parallel
Strand 3	A	574	581	parallel
Strand 4	A	619	627	anti-parallel
Strand 5	A	384	392	anti-parallel
Strand 6	A	640	649	anti-parallel
Strand 7	A	806	813	anti-parallel
Strand 8	A	795	801	anti-parallel
Strand 9	A	682	686	parallel
Strand 10	A	722	725	parallel
Strand 11	A	777	778	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	441	442	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	451	first strand
Strand 2	A	1269	1270	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	754	755	first strand
Strand 2	A	784	785	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	830	836	first strand
Strand 2	A	880	886	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1150	1152	first strand
Strand 2	A	1143	1145	anti-parallel
Strand 3	A	1003	1008	parallel
Strand 4	A	919	923	parallel
Strand 5	A	1191	1195	parallel
Strand 6	A	1214	1217	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1106	1108	first strand
Strand 2	A	1048	1053	anti-parallel
Strand 3	A	1082	1088	anti-parallel
Strand 4	A	1073	1079	anti-parallel
Strand 5	A	1171	1172	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	6	12	parallel
Strand 3	B	331	337	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	217	221	anti-parallel
Strand 3	B	177	181	anti-parallel
Strand 4	B	239	242	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	289	290	anti-parallel

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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	549	first strand
Strand 2	B	499	504	parallel
Strand 3	B	574	581	parallel
Strand 4	B	619	627	anti-parallel
Strand 5	B	384	392	anti-parallel
Strand 6	B	640	649	anti-parallel
Strand 7	B	806	813	anti-parallel
Strand 8	B	795	801	anti-parallel
Strand 9	B	684	686	parallel
Strand 10	B	722	725	parallel
Strand 11	B	777	778	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	415	first strand
Strand 2	B	441	442	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	1269	1270	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	754	755	first strand
Strand 2	B	784	785	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	830	836	first strand
Strand 2	B	880	886	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1150	1152	first strand
Strand 2	B	1143	1145	anti-parallel
Strand 3	B	1003	1008	parallel
Strand 4	B	918	923	parallel
Strand 5	B	1190	1195	parallel
Strand 6	B	1214	1217	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1106	1108	first strand
Strand 2	B	1048	1053	anti-parallel
Strand 3	B	1082	1088	anti-parallel
Strand 4	B	1073	1079	anti-parallel
Strand 5	B	1171	1172	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FIJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FIJ