Analysis of interatomic Contacts of Structural Units in PDB entry:
6FIY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FIY entry

There are 2 chains in PDB entry 6FIY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLY 300
B	PRO -2	GLY 300

There are 28 helices in PDB entry 6FIY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	48	Right-handed alpha
Helix 2	AA2	A	49	52	Right-handed 310
Helix 3	AA3	A	60	69	Right-handed alpha
Helix 4	AA4	A	82	86	Right-handed 310
Helix 5	AA5	A	102	118	Right-handed alpha
Helix 6	AA6	A	132	136	Right-handed 310
Helix 7	AA7	A	150	159	Right-handed alpha
Helix 8	AA8	A	179	185	Right-handed alpha
Helix 9	AA9	A	187	196	Right-handed alpha
Helix 10	AB1	A	206	210	Right-handed 310
Helix 11	AB2	A	214	220	Right-handed alpha
Helix 12	AB3	A	254	266	Right-handed alpha
Helix 13	AB4	A	274	278	Right-handed 310
Helix 14	AB5	A	292	298	Right-handed alpha
Helix 15	AB6	B	28	48	Right-handed alpha
Helix 16	AB7	B	49	52	Right-handed 310
Helix 17	AB8	B	60	69	Right-handed alpha
Helix 18	AB9	B	82	86	Right-handed 310
Helix 19	AC1	B	102	118	Right-handed alpha
Helix 20	AC2	B	132	136	Right-handed 310
Helix 21	AC3	B	150	159	Right-handed alpha
Helix 22	AC4	B	179	185	Right-handed alpha
Helix 23	AC5	B	187	196	Right-handed alpha
Helix 24	AC6	B	206	210	Right-handed 310
Helix 25	AC7	B	214	220	Right-handed alpha
Helix 26	AC8	B	254	266	Right-handed alpha
Helix 27	AC9	B	274	278	Right-handed 310
Helix 28	AD1	B	292	298	Right-handed alpha

There are 8 sheets in PDB entry 6FIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	59	first strand
Strand 2	A	94	100	anti-parallel
Strand 3	A	15	23	anti-parallel
Strand 4	A	121	130	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	244	252	anti-parallel
Strand 3	A	169	178	anti-parallel
Strand 4	A	280	282	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	244	252	anti-parallel
Strand 3	A	169	178	anti-parallel
Strand 4	A	286	290	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	226	227	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	59	first strand
Strand 2	B	94	100	anti-parallel
Strand 3	B	15	23	anti-parallel
Strand 4	B	121	130	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	244	252	anti-parallel
Strand 3	B	169	178	anti-parallel
Strand 4	B	280	282	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	238	first strand
Strand 2	B	244	252	anti-parallel
Strand 3	B	169	178	anti-parallel
Strand 4	B	286	290	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	223	first strand
Strand 2	B	226	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FIY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FIY