Analysis of interatomic Contacts of Structural Units in PDB entry:
6FJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FJ1 entry

There are 3 chains in PDB entry 6FJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 217	HIS 469
B	GLY 217	HIS 469
C	GLY 217	HIS 469

There are 18 helices in PDB entry 6FJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	217	230	Right-handed alpha
Helix 2	AA2	A	245	252	Right-handed alpha
Helix 3	AA3	A	263	279	Right-handed alpha
Helix 4	AA4	A	307	321	Right-handed alpha
Helix 5	AA5	A	433	438	Right-handed alpha
Helix 6	AA6	A	446	457	Right-handed alpha
Helix 7	AA7	B	218	230	Right-handed alpha
Helix 8	AA8	B	245	252	Right-handed alpha
Helix 9	AA9	B	263	279	Right-handed alpha
Helix 10	AB1	B	307	321	Right-handed alpha
Helix 11	AB2	B	433	438	Right-handed alpha
Helix 12	AB3	B	446	457	Right-handed alpha
Helix 13	AB4	C	218	230	Right-handed alpha
Helix 14	AB5	C	245	252	Right-handed alpha
Helix 15	AB6	C	263	279	Right-handed alpha
Helix 16	AB7	C	307	321	Right-handed alpha
Helix 17	AB8	C	433	438	Right-handed alpha
Helix 18	AB9	C	446	457	Right-handed alpha

There are 18 sheets in PDB entry 6FJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	244	first strand
Strand 2	A	233	237	anti-parallel
Strand 3	A	325	327	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	256	first strand
Strand 2	A	259	262	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	288	first strand
Strand 2	A	294	297	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	331	333	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	369	first strand
Strand 2	A	355	360	anti-parallel
Strand 3	A	346	350	anti-parallel
Strand 4	A	462	466	parallel
Strand 5	A	382	385	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	397	first strand
Strand 2	A	403	412	anti-parallel
Strand 3	A	419	422	anti-parallel
Strand 4	A	443	445	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	233	237	anti-parallel
Strand 3	B	325	327	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	256	first strand
Strand 2	B	259	262	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	288	first strand
Strand 2	B	294	297	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	331	333	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	369	first strand
Strand 2	B	355	360	anti-parallel
Strand 3	B	346	350	anti-parallel
Strand 4	B	462	466	parallel
Strand 5	B	382	385	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	397	first strand
Strand 2	B	403	412	anti-parallel
Strand 3	B	419	422	anti-parallel
Strand 4	B	443	445	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	244	first strand
Strand 2	C	233	237	anti-parallel
Strand 3	C	325	327	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	256	first strand
Strand 2	C	259	262	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	288	first strand
Strand 2	C	294	297	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	306	first strand
Strand 2	C	331	333	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	369	first strand
Strand 2	C	355	360	anti-parallel
Strand 3	C	346	350	anti-parallel
Strand 4	C	462	466	parallel
Strand 5	C	382	385	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	390	397	first strand
Strand 2	C	403	412	anti-parallel
Strand 3	C	419	422	anti-parallel
Strand 4	C	443	445	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FJ1