Analysis of interatomic Contacts of Structural Units in PDB entry:
6FJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FJ3 entry

There are 6 chains in PDB entry 6FJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 31ASP 1220
A
 SER 1222ALA 480
B
 VAL 2VAL 2
B
 GLU 4GLN 10
B
 ALA 12SER 17
B
 GLU 19TYR 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6FJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 57Right-handed alpha
Helix 2
AA2
A
179 212Right-handed alpha
Helix 3
AA3
A
213 216Right-handed 310
Helix 4
AA4
A
217 246Right-handed alpha
Helix 5
AA5
A
279 312Right-handed alpha
Helix 6
AA6
A
316 347Right-handed alpha
Helix 7
AA7
A
357 359Right-handed 310
Helix 8
AA8
A
360 383Right-handed alpha
Helix 9
AA9
A
1225 1229Right-handed 310
Helix 10
AB1
A
1232 1244Right-handed alpha
Helix 11
AB2
A
1264 1277Right-handed alpha
Helix 12
AB3
A
1278 1282Right-handed 310
Helix 13
AB4
A
1293 1307Right-handed alpha
Helix 14
AB5
A
1318 1327Right-handed alpha
Helix 15
AB6
A
1342 1351Right-handed alpha
Helix 16
AB7
A
1360 1367Right-handed alpha
Helix 17
AB8
A
1379 1395Right-handed alpha
Helix 18
AB9
A
1398 427Right-handed alpha
Helix 19
AC1
A
434 450Right-handed alpha
Helix 20
AC2
A
450 460Right-handed alpha
Helix 21
AC3
A
463 478Right-handed alpha
Helix 22
AC4
B
2 34Right-handed alpha
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There are 2 sheets in PDB entry 6FJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 130first strand
Strand 2
A
143 147anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1310 1313first strand
Strand 2
A
1284 1289parallel
Strand 3
A
1250 1255parallel
Strand 4
A
1331 1334parallel
Strand 5
A
1354 1358parallel
Strand 6
A
1373 1375parallel
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