Analysis of interatomic Contacts of Structural Units in PDB entry:
6FJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FJ4 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 6FJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 803PHE 953
A
 MSE 955HIS 1085
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6FJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
816 821Right-handed 310
Helix 2
AA2
A
879 890Right-handed alpha
Helix 3
AA3
A
912 920Right-handed alpha
Helix 4
AA4
A
920 929Right-handed alpha
Helix 5
AA5
A
937 944Right-handed alpha
Helix 6
AA6
A
954 968Right-handed alpha
Helix 7
AA7
A
986 1002Right-handed alpha
Helix 8
AA8
A
1020 1033Right-handed alpha
Helix 9
AA9
A
1059 1071Right-handed alpha
Helix 10
AB1
A
1072 1074Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6FJ4.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
828 836first strand
Strand 2
A
839 847anti-parallel
Strand 3
A
897 900anti-parallel
Strand 4
A
859 863parallel
Strand 5
A
948 953parallel
Strand 6
A
973 977parallel
Strand 7
A
1009 1015parallel
Strand 8
A
1048 1053parallel
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