Analysis of interatomic Contacts of Structural Units in PDB entry:
6FJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FJW entry

There is 1 chain in PDB entry 6FJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLU 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 6FJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 28Right-handed alpha
Helix 2
AA2
A
31 39Right-handed alpha
Helix 3
AA3
A
65 79Right-handed alpha
Helix 4
AA4
A
101 110Right-handed alpha
Helix 5
AA5
A
139 155Right-handed alpha
Helix 6
AA6
A
162 172Right-handed alpha
Helix 7
AA7
A
206 224Right-handed alpha
Helix 8
AA8
A
228 232Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 6FJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 52first strand
Strand 2
A
56 63anti-parallel
Strand 3
A
2 9anti-parallel
Strand 4
A
94 99anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
90 91anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 182first strand
Strand 2
A
195 203anti-parallel
Strand 3
A
117 126anti-parallel
Strand 4
A
236 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
134 135anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
191 192anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il