Analysis of interatomic Contacts of Structural Units in PDB entry:
6FKK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FKK entry

There is 1 chain in PDB entry 6FKK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 42HIS 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6FKK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 60Right-handed 310
Helix 2
AA2
A
98 108Right-handed alpha
Helix 3
AA3
A
273 279Right-handed 310
Helix 4
AA4
A
339 346Right-handed alpha
Helix 5
AA5
A
379 383Right-handed 310
Helix 6
AA6
A
384 394Right-handed alpha
Helix 7
AA7
A
404 407Right-handed 310
Helix 8
AA8
A
516 523Right-handed alpha
Helix 9
AA9
A
559 567Right-handed alpha
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There are 10 sheets in PDB entry 6FKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
502 507anti-parallel
Strand 3
A
494 498anti-parallel
Strand 4
A
485 489anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
70 74anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
89 94anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 124first strand
Strand 2
A
130 134anti-parallel
Strand 3
A
141 146anti-parallel
Strand 4
A
167 173anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
194 200anti-parallel
Strand 3
A
208 211anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 236first strand
Strand 2
A
239 247anti-parallel
Strand 3
A
258 266anti-parallel
Strand 4
A
284 289anti-parallel
Strand 5
A
401 402parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
298 299anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 306first strand
Strand 2
A
315 323anti-parallel
Strand 3
A
310 312anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 306first strand
Strand 2
A
315 323anti-parallel
Strand 3
A
331 338anti-parallel
Strand 4
A
410 413anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 429first strand
Strand 2
A
435 443anti-parallel
Strand 3
A
447 456anti-parallel
Strand 4
A
465 475anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 539first strand
Strand 2
A
528 531anti-parallel
Strand 3
A
552 553anti-parallel
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