Analysis of interatomic Contacts of Structural Units in PDB entry:
6FKM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FKM entry

There are 2 chains in PDB entry 6FKM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 62	CYS 573
B	GLN 43	HIS 569

There are 16 helices in PDB entry 6FKM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	154	159	Right-handed alpha
Helix 2	AA2	A	215	221	Right-handed 310
Helix 3	AA3	A	336	344	Right-handed alpha
Helix 4	AA4	A	375	391	Right-handed alpha
Helix 5	AA5	A	528	535	Right-handed alpha
Helix 6	AA6	A	551	555	Right-handed 310
Helix 7	AA7	A	561	563	Right-handed 310
Helix 8	AA8	B	98	108	Right-handed alpha
Helix 9	AA9	B	111	115	Right-handed 310
Helix 10	AB1	B	273	279	Right-handed 310
Helix 11	AB2	B	339	346	Right-handed alpha
Helix 12	AB3	B	379	383	Right-handed 310
Helix 13	AB4	B	384	394	Right-handed alpha
Helix 14	AB5	B	403	407	Right-handed 310
Helix 15	AB6	B	516	524	Right-handed alpha
Helix 16	AB7	B	559	566	Right-handed alpha

There are 20 sheets in PDB entry 6FKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	70	first strand
Strand 2	A	514	519	anti-parallel
Strand 3	A	506	510	anti-parallel
Strand 4	A	499	500	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	80	first strand
Strand 2	A	87	91	anti-parallel
Strand 3	A	94	98	anti-parallel
Strand 4	A	104	109	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	131	133	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	143	first strand
Strand 2	A	148	153	anti-parallel
Strand 3	A	160	164	anti-parallel
Strand 4	A	171	174	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	195	first strand
Strand 2	A	202	209	anti-parallel
Strand 3	A	224	228	anti-parallel
Strand 4	A	247	248	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	267	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	290	298	anti-parallel
Strand 4	A	308	316	anti-parallel
Strand 5	A	428	429	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	A	308	316	anti-parallel
Strand 3	A	434	436	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	333	first strand
Strand 2	A	351	360	anti-parallel
Strand 3	A	363	374	anti-parallel
Strand 4	A	440	442	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	452	first strand
Strand 2	A	458	464	anti-parallel
Strand 3	A	468	474	anti-parallel
Strand 4	A	480	487	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	550	first strand
Strand 2	A	541	543	anti-parallel
Strand 3	A	565	566	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	502	507	anti-parallel
Strand 3	B	494	498	anti-parallel
Strand 4	B	485	489	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	66	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	130	134	anti-parallel
Strand 3	B	141	146	anti-parallel
Strand 4	B	167	173	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	190	first strand
Strand 2	B	195	200	anti-parallel
Strand 3	B	208	211	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	236	first strand
Strand 2	B	239	247	anti-parallel
Strand 3	B	258	266	anti-parallel
Strand 4	B	284	287	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	298	299	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	306	first strand
Strand 2	B	315	323	anti-parallel
Strand 3	B	310	312	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	306	first strand
Strand 2	B	315	323	anti-parallel
Strand 3	B	331	338	anti-parallel
Strand 4	B	410	413	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	429	first strand
Strand 2	B	435	443	anti-parallel
Strand 3	B	447	456	anti-parallel
Strand 4	B	465	475	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	530	first strand
Strand 2	B	537	539	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FKM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FKM