Analysis of interatomic Contacts of Structural Units in PDB entry:
6FKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FKO entry

There are 2 chains in PDB entry 6FKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 343
B
 MET 1MET 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6FKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
59 64Right-handed 310
Helix 3
AA3
A
79 90Right-handed alpha
Helix 4
AA4
A
110 118Right-handed alpha
Helix 5
AA5
A
118 125Right-handed alpha
Helix 6
AA6
A
131 141Right-handed alpha
Helix 7
AA7
A
150 155Right-handed alpha
Helix 8
AA8
A
167 178Right-handed alpha
Helix 9
AA9
A
188 192Right-handed 310
Helix 10
AB1
A
207 215Right-handed alpha
Helix 11
AB2
A
218 220Right-handed 310
Helix 12
AB3
A
251 256Right-handed alpha
Helix 13
AB4
A
275 287Right-handed alpha
Helix 14
AB5
A
295 299Right-handed 310
Helix 15
AB6
A
300 318Right-handed alpha
Helix 16
AB7
A
332 334Right-handed 310
Helix 17
AB8
A
339 343Right-handed alpha
Helix 18
AB9
B
16 29Right-handed alpha
Helix 19
AC1
B
59 64Right-handed 310
Helix 20
AC2
B
79 90Right-handed alpha
Helix 21
AC3
B
112 118Right-handed alpha
Helix 22
AC4
B
118 125Right-handed alpha
Helix 23
AC5
B
131 141Right-handed alpha
Helix 24
AC6
B
150 155Right-handed alpha
Helix 25
AC7
B
167 178Right-handed alpha
Helix 26
AC8
B
188 192Right-handed 310
Helix 27
AC9
B
207 215Right-handed alpha
Helix 28
AD1
B
218 220Right-handed 310
Helix 29
AD2
B
251 256Right-handed alpha
Helix 30
AD3
B
275 287Right-handed alpha
Helix 31
AD4
B
295 299Right-handed 310
Helix 32
AD5
B
300 318Right-handed alpha
Helix 33
AD6
B
332 334Right-handed 310
Helix 34
AD7
B
339 343Right-handed alpha
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There are 8 sheets in PDB entry 6FKO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
69 72parallel
Strand 3
A
32 35parallel
Strand 4
A
181 184parallel
Strand 5
A
4 9parallel
Strand 6
A
222 230parallel
Strand 7
A
290 294parallel
Strand 8
A
323 328parallel
Strand 9
A
336 338anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
52 55anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
107 108parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
270 272anti-parallel
Strand 3
A
249 250anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 102first strand
Strand 2
B
69 72parallel
Strand 3
B
32 35parallel
Strand 4
B
181 184parallel
Strand 5
B
4 9parallel
Strand 6
B
222 230parallel
Strand 7
B
290 294parallel
Strand 8
B
323 328parallel
Strand 9
B
336 338anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
52 55anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
107 108parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
B
270 272anti-parallel
Strand 3
B
249 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il