Analysis of interatomic Contacts of Structural Units in PDB entry:
6FKV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FKV entry

There are 2 chains in PDB entry 6FKV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 4	GLN 507
B	ALA 4	LEU 508

There are 32 helices in PDB entry 6FKV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	68	Right-handed alpha
Helix 2	AA2	A	70	101	Right-handed alpha
Helix 3	AA3	A	103	125	Right-handed alpha
Helix 4	AA4	A	162	175	Right-handed alpha
Helix 5	AA5	A	187	202	Right-handed alpha
Helix 6	AA6	A	218	226	Right-handed alpha
Helix 7	AA7	A	227	230	Right-handed 310
Helix 8	AA8	A	240	254	Right-handed alpha
Helix 9	AA9	A	275	289	Right-handed alpha
Helix 10	AB1	A	290	293	Right-handed 310
Helix 11	AB2	A	307	321	Right-handed alpha
Helix 12	AB3	A	340	358	Right-handed alpha
Helix 13	AB4	A	398	403	Right-handed alpha
Helix 14	AB5	A	417	426	Right-handed alpha
Helix 15	AB6	A	440	451	Right-handed alpha
Helix 16	AB7	A	488	492	Right-handed alpha
Helix 17	AB8	B	48	68	Right-handed alpha
Helix 18	AB9	B	70	101	Right-handed alpha
Helix 19	AC1	B	103	125	Right-handed alpha
Helix 20	AC2	B	162	175	Right-handed alpha
Helix 21	AC3	B	187	201	Right-handed alpha
Helix 22	AC4	B	218	226	Right-handed alpha
Helix 23	AC5	B	227	230	Right-handed 310
Helix 24	AC6	B	240	254	Right-handed alpha
Helix 25	AC7	B	275	289	Right-handed alpha
Helix 26	AC8	B	290	293	Right-handed 310
Helix 27	AC9	B	307	321	Right-handed alpha
Helix 28	AD1	B	340	358	Right-handed alpha
Helix 29	AD2	B	398	403	Right-handed alpha
Helix 30	AD3	B	417	426	Right-handed alpha
Helix 31	AD4	B	440	451	Right-handed alpha
Helix 32	AD5	B	488	492	Right-handed alpha

There are 14 sheets in PDB entry 6FKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	40	45	parallel
Strand 3	A	28	32	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	21	23	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	134	first strand
Strand 2	A	140	148	anti-parallel
Strand 3	A	493	501	anti-parallel
Strand 4	B	455	458	parallel
Strand 5	B	435	437	parallel
Strand 6	B	266	270	parallel
Strand 7	B	298	304	parallel
Strand 8	B	409	415	parallel
Strand 9	B	390	393	parallel
Strand 10	B	360	363	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	178	183	parallel
Strand 3	A	151	156	parallel
Strand 4	A	234	238	parallel
Strand 5	A	258	261	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	363	first strand
Strand 2	A	390	393	anti-parallel
Strand 3	A	409	415	parallel
Strand 4	A	298	304	parallel
Strand 5	A	266	270	parallel
Strand 6	A	435	437	parallel
Strand 7	A	455	458	parallel
Strand 8	B	493	501	parallel
Strand 9	B	140	148	anti-parallel
Strand 10	B	131	134	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	377	378	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	368	first strand
Strand 2	A	386	387	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	431	first strand
Strand 2	A	474	475	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	40	45	parallel
Strand 3	B	28	32	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	21	23	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	178	183	parallel
Strand 3	B	151	156	parallel
Strand 4	B	234	238	parallel
Strand 5	B	259	261	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	325	first strand
Strand 2	B	377	378	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	368	first strand
Strand 2	B	386	387	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	431	first strand
Strand 2	B	474	475	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FKV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FKV