Analysis of interatomic Contacts of Structural Units in PDB entry:
6FKW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FKW entry

There are 3 chains in PDB entry 6FKW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1	LEU 576
B	ASN 1	LEU 576
C	ASN 1	ILE 128

There are 57 helices in PDB entry 6FKW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	8	Right-handed alpha
Helix 2	AA2	A	36	40	Right-handed 310
Helix 3	AA3	A	96	103	Right-handed 310
Helix 4	AA4	A	146	150	Right-handed 310
Helix 5	AA5	A	198	203	Right-handed alpha
Helix 6	AA6	A	212	216	Right-handed 310
Helix 7	AA7	A	219	224	Right-handed alpha
Helix 8	AA8	A	228	233	Right-handed 310
Helix 9	AA9	A	261	266	Right-handed 310
Helix 10	AB1	A	366	369	Right-handed 310
Helix 11	AB2	A	435	439	Right-handed alpha
Helix 12	AB3	A	534	539	Right-handed alpha
Helix 13	AB4	A	548	550	Right-handed 310
Helix 14	AB5	A	551	560	Right-handed alpha
Helix 15	AB6	A	560	565	Right-handed alpha
Helix 16	AB7	B	2	8	Right-handed alpha
Helix 17	AB8	B	36	40	Right-handed 310
Helix 18	AB9	B	96	103	Right-handed 310
Helix 19	AC1	B	146	150	Right-handed 310
Helix 20	AC2	B	198	203	Right-handed alpha
Helix 21	AC3	B	212	216	Right-handed 310
Helix 22	AC4	B	219	224	Right-handed alpha
Helix 23	AC5	B	228	233	Right-handed 310
Helix 24	AC6	B	261	266	Right-handed 310
Helix 25	AC7	B	366	369	Right-handed 310
Helix 26	AC8	B	435	439	Right-handed alpha
Helix 27	AC9	B	534	539	Right-handed alpha
Helix 28	AD1	B	547	550	Right-handed 310
Helix 29	AD2	B	551	560	Right-handed alpha
Helix 30	AD3	B	560	565	Right-handed alpha
Helix 31	AD4	C	2	8	Right-handed alpha
Helix 32	AD5	C	36	40	Right-handed 310
Helix 33	AD6	C	96	103	Right-handed 310
Helix 34	AD7	C	146	150	Right-handed 310
Helix 35	AD8	C	198	203	Right-handed alpha
Helix 36	AD9	C	212	216	Right-handed 310
Helix 37	AE1	C	219	224	Right-handed alpha
Helix 38	AE2	C	228	233	Right-handed 310
Helix 39	AE3	C	261	266	Right-handed 310
Helix 40	AE4	C	366	369	Right-handed 310
Helix 41	AE5	C	435	439	Right-handed alpha
Helix 42	AE6	C	534	539	Right-handed alpha
Helix 43	AE7	C	548	550	Right-handed 310
Helix 44	AE8	C	551	560	Right-handed alpha
Helix 45	AE9	C	560	565	Right-handed alpha
Helix 46	AF1	D	2	8	Right-handed alpha
Helix 47	AF2	D	36	40	Right-handed 310
Helix 48	AF3	D	96	101	Right-handed 310
Helix 49	AF4	D	146	150	Right-handed 310
Helix 50	AF5	D	198	203	Right-handed alpha
Helix 51	AF6	D	212	216	Right-handed 310
Helix 52	AF7	D	219	224	Right-handed alpha
Helix 53	AF8	D	228	233	Right-handed 310
Helix 54	AF9	D	261	266	Right-handed 310
Helix 55	AG1	D	366	369	Right-handed 310
Helix 56	AG2	D	534	539	Right-handed alpha
Helix 57	AG3	D	551	560	Right-handed alpha

There are 40 sheets in PDB entry 6FKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	471	473	parallel
Strand 3	A	477	481	anti-parallel
Strand 4	A	486	491	anti-parallel
Strand 5	A	497	502	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	570	575	anti-parallel
Strand 3	A	521	527	anti-parallel
Strand 4	A	512	515	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	64	68	anti-parallel
Strand 3	A	75	79	anti-parallel
Strand 4	A	87	91	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	118	122	anti-parallel
Strand 3	A	127	132	anti-parallel
Strand 4	A	138	143	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	160	first strand
Strand 2	A	163	166	anti-parallel
Strand 3	A	178	183	anti-parallel
Strand 4	A	189	194	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	249	253	anti-parallel
Strand 3	A	275	279	anti-parallel
Strand 4	A	286	291	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	313	first strand
Strand 2	A	316	324	anti-parallel
Strand 3	A	329	334	anti-parallel
Strand 4	A	340	345	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	362	364	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	408	414	anti-parallel
Strand 3	A	428	434	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	395	first strand
Strand 2	A	400	406	anti-parallel
Strand 3	A	444	450	anti-parallel
Strand 4	A	455	462	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	471	473	parallel
Strand 3	B	477	481	anti-parallel
Strand 4	B	486	491	anti-parallel
Strand 5	B	497	502	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	47	first strand
Strand 2	B	570	575	anti-parallel
Strand 3	B	521	527	anti-parallel
Strand 4	B	512	515	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	64	68	anti-parallel
Strand 3	B	75	79	anti-parallel
Strand 4	B	87	91	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	118	122	anti-parallel
Strand 3	B	127	132	anti-parallel
Strand 4	B	138	143	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	163	166	anti-parallel
Strand 3	B	178	183	anti-parallel
Strand 4	B	189	194	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	249	253	anti-parallel
Strand 3	B	275	279	anti-parallel
Strand 4	B	286	291	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	313	first strand
Strand 2	B	316	324	anti-parallel
Strand 3	B	329	334	anti-parallel
Strand 4	B	340	345	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	355	first strand
Strand 2	B	362	364	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	379	first strand
Strand 2	B	408	414	anti-parallel
Strand 3	B	428	434	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	401	406	anti-parallel
Strand 3	B	444	450	anti-parallel
Strand 4	B	455	462	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	27	first strand
Strand 2	C	471	473	parallel
Strand 3	C	477	481	anti-parallel
Strand 4	C	486	491	anti-parallel
Strand 5	C	497	502	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	47	first strand
Strand 2	C	570	575	anti-parallel
Strand 3	C	521	527	anti-parallel
Strand 4	C	512	515	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	64	68	anti-parallel
Strand 3	C	75	79	anti-parallel
Strand 4	C	86	91	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	118	122	anti-parallel
Strand 3	C	127	132	anti-parallel
Strand 4	C	138	143	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	160	first strand
Strand 2	C	163	166	anti-parallel
Strand 3	C	178	183	anti-parallel
Strand 4	C	189	194	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	244	first strand
Strand 2	C	249	253	anti-parallel
Strand 3	C	275	279	anti-parallel
Strand 4	C	286	291	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	313	first strand
Strand 2	C	316	324	anti-parallel
Strand 3	C	329	334	anti-parallel
Strand 4	C	340	345	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	355	first strand
Strand 2	C	362	364	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	379	first strand
Strand 2	C	408	414	anti-parallel
Strand 3	C	428	434	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	395	first strand
Strand 2	C	400	406	anti-parallel
Strand 3	C	444	450	anti-parallel
Strand 4	C	455	462	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	471	473	parallel
Strand 3	D	477	481	anti-parallel
Strand 4	D	486	491	anti-parallel
Strand 5	D	496	502	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	47	first strand
Strand 2	D	570	575	anti-parallel
Strand 3	D	521	527	anti-parallel
Strand 4	D	512	515	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	61	first strand
Strand 2	D	64	68	anti-parallel
Strand 3	D	75	79	anti-parallel
Strand 4	D	87	91	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	115	first strand
Strand 2	D	118	122	anti-parallel
Strand 3	D	127	132	anti-parallel
Strand 4	D	138	143	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	160	first strand
Strand 2	D	163	166	anti-parallel
Strand 3	D	178	183	anti-parallel
Strand 4	D	189	194	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	244	first strand
Strand 2	D	249	253	anti-parallel
Strand 3	D	275	279	anti-parallel
Strand 4	D	286	291	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	313	first strand
Strand 2	D	316	324	anti-parallel
Strand 3	D	329	334	anti-parallel
Strand 4	D	340	345	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	355	first strand
Strand 2	D	362	364	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	379	first strand
Strand 2	D	408	414	anti-parallel
Strand 3	D	428	434	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	395	first strand
Strand 2	D	400	406	anti-parallel
Strand 3	D	444	450	anti-parallel
Strand 4	D	455	462	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FKW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FKW