Analysis of interatomic Contacts of Structural Units in PDB entry:
6FMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FMO entry

There are 4 chains in PDB entry 6FMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 31	LYS 478
B	LEU 31	LYS 478
C	LEU 31	LYS 478
D	LEU 31	LYS 478

There are 88 helices in PDB entry 6FMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	51	Right-handed alpha
Helix 2	AA2	A	51	64	Right-handed alpha
Helix 3	AA3	A	82	84	Right-handed 310
Helix 4	AA4	A	85	91	Right-handed alpha
Helix 5	AA5	A	99	105	Right-handed 310
Helix 6	AA6	A	106	111	Right-handed alpha
Helix 7	AA7	A	114	118	Right-handed 310
Helix 8	AA8	A	119	133	Right-handed alpha
Helix 9	AA9	A	138	158	Right-handed alpha
Helix 10	AB1	A	167	184	Right-handed alpha
Helix 11	AB2	A	185	208	Right-handed alpha
Helix 12	AB3	A	225	248	Right-handed alpha
Helix 13	AB4	A	260	268	Right-handed alpha
Helix 14	AB5	A	277	308	Right-handed alpha
Helix 15	AB6	A	312	324	Right-handed alpha
Helix 16	AB7	A	331	338	Right-handed alpha
Helix 17	AB8	A	339	353	Right-handed alpha
Helix 18	AB9	A	383	388	Right-handed alpha
Helix 19	AC1	A	417	421	Right-handed 310
Helix 20	AC2	A	424	442	Right-handed alpha
Helix 21	AC3	A	466	468	Right-handed 310
Helix 22	AC4	B	44	51	Right-handed alpha
Helix 23	AC5	B	51	64	Right-handed alpha
Helix 24	AC6	B	82	84	Right-handed 310
Helix 25	AC7	B	85	91	Right-handed alpha
Helix 26	AC8	B	99	105	Right-handed 310
Helix 27	AC9	B	106	111	Right-handed alpha
Helix 28	AD1	B	119	133	Right-handed alpha
Helix 29	AD2	B	138	158	Right-handed alpha
Helix 30	AD3	B	167	184	Right-handed alpha
Helix 31	AD4	B	185	208	Right-handed alpha
Helix 32	AD5	B	226	231	Right-handed alpha
Helix 33	AD6	B	231	248	Right-handed alpha
Helix 34	AD7	B	260	268	Right-handed alpha
Helix 35	AD8	B	277	308	Right-handed alpha
Helix 36	AD9	B	312	324	Right-handed alpha
Helix 37	AE1	B	331	338	Right-handed alpha
Helix 38	AE2	B	339	353	Right-handed alpha
Helix 39	AE3	B	383	388	Right-handed alpha
Helix 40	AE4	B	417	421	Right-handed 310
Helix 41	AE5	B	424	442	Right-handed alpha
Helix 42	AE6	B	466	468	Right-handed 310
Helix 43	AE7	C	44	51	Right-handed alpha
Helix 44	AE8	C	51	64	Right-handed alpha
Helix 45	AE9	C	82	84	Right-handed 310
Helix 46	AF1	C	85	91	Right-handed alpha
Helix 47	AF2	C	99	105	Right-handed 310
Helix 48	AF3	C	106	111	Right-handed alpha
Helix 49	AF4	C	114	118	Right-handed 310
Helix 50	AF5	C	120	133	Right-handed alpha
Helix 51	AF6	C	138	158	Right-handed alpha
Helix 52	AF7	C	167	184	Right-handed alpha
Helix 53	AF8	C	185	192	Right-handed alpha
Helix 54	AF9	C	193	198	Right-handed alpha
Helix 55	AG1	C	198	208	Right-handed alpha
Helix 56	AG2	C	226	231	Right-handed alpha
Helix 57	AG3	C	231	248	Right-handed alpha
Helix 58	AG4	C	260	268	Right-handed alpha
Helix 59	AG5	C	277	308	Right-handed alpha
Helix 60	AG6	C	312	324	Right-handed alpha
Helix 61	AG7	C	331	338	Right-handed alpha
Helix 62	AG8	C	339	353	Right-handed alpha
Helix 63	AG9	C	383	388	Right-handed alpha
Helix 64	AH1	C	417	421	Right-handed 310
Helix 65	AH2	C	424	442	Right-handed alpha
Helix 66	AH3	C	466	468	Right-handed 310
Helix 67	AH4	D	44	51	Right-handed alpha
Helix 68	AH5	D	51	64	Right-handed alpha
Helix 69	AH6	D	82	84	Right-handed 310
Helix 70	AH7	D	85	91	Right-handed alpha
Helix 71	AH8	D	99	105	Right-handed 310
Helix 72	AH9	D	106	111	Right-handed alpha
Helix 73	AI1	D	119	133	Right-handed alpha
Helix 74	AI2	D	138	158	Right-handed alpha
Helix 75	AI3	D	167	184	Right-handed alpha
Helix 76	AI4	D	185	192	Right-handed alpha
Helix 77	AI5	D	193	208	Right-handed alpha
Helix 78	AI6	D	209	213	Right-handed 310
Helix 79	AI7	D	225	250	Right-handed alpha
Helix 80	AI8	D	260	268	Right-handed alpha
Helix 81	AI9	D	277	308	Right-handed alpha
Helix 82	AJ1	D	312	324	Right-handed alpha
Helix 83	AJ2	D	331	338	Right-handed alpha
Helix 84	AJ3	D	339	353	Right-handed alpha
Helix 85	AJ4	D	383	388	Right-handed alpha
Helix 86	AJ5	D	417	421	Right-handed 310
Helix 87	AJ6	D	424	442	Right-handed alpha
Helix 88	AJ7	D	466	468	Right-handed 310

There are 16 sheets in PDB entry 6FMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	71	first strand
Strand 2	A	76	80	anti-parallel
Strand 3	A	379	382	parallel
Strand 4	A	359	363	anti-parallel
Strand 5	A	97	98	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	470	475	anti-parallel
Strand 3	A	443	447	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	369	first strand
Strand 2	A	372	374	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	463	464	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	379	382	parallel
Strand 4	B	359	363	anti-parallel
Strand 5	B	97	98	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	470	475	anti-parallel
Strand 3	B	443	447	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	369	first strand
Strand 2	B	372	374	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	463	464	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	C	76	80	anti-parallel
Strand 3	C	379	382	parallel
Strand 4	C	359	363	anti-parallel
Strand 5	C	97	98	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	166	first strand
Strand 2	C	470	475	anti-parallel
Strand 3	C	443	447	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	369	first strand
Strand 2	C	372	374	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	456	first strand
Strand 2	C	463	464	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	71	first strand
Strand 2	D	76	80	anti-parallel
Strand 3	D	379	382	parallel
Strand 4	D	359	363	anti-parallel
Strand 5	D	97	98	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	166	first strand
Strand 2	D	470	475	anti-parallel
Strand 3	D	443	447	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	369	first strand
Strand 2	D	372	374	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	456	first strand
Strand 2	D	463	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FMO