Analysis of interatomic Contacts of Structural Units in PDB entry:
6FND

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6FND entry

There are 35 chains in PDB entry 6FND (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 285	THR 302
A	VAL 304	VAL 306
A	HIS 308	GLY 311
A	GLY 313	LYS 379
A	LYS 381	VAL 469
A	LEU 471	PHE 488
A	SER 490	GLU 496
A	VAL 498	ILE 626
A	TYR 628	HIS 665
A	LEU 667	PRO 707
B	LEU 292	THR 302
B	VAL 304	VAL 306
B	HIS 308	GLY 311
B	GLY 313	THR 318
B	HIS 320	GLU 378
B	LYS 380	PRO 412
B	LEU 414	PHE 488
B	SER 490	GLU 496
B	VAL 498	PHE 532
B	THR 534	ASP 574
B	SER 576	ILE 626
B	TYR 628	ASN 653
B	ALA 655	HIS 665
B	LEU 667	LYS 698
B	THR 700	SER 709
C	ALA 289	GLY 311
C	GLY 313	THR 318
C	HIS 320	LYS 379
C	LYS 381	VAL 469
C	LEU 471	PHE 488
C	SER 490	GLU 496
C	VAL 498	ASP 574
C	SER 576	ILE 626
C	TYR 628	HIS 665
C	LEU 667	HIS 689

There are 75 helices in PDB entry 6FND. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	296	303	Right-handed alpha
Helix 2	AA2	A	338	341	Right-handed 310
Helix 3	AA3	A	342	356	Right-handed alpha
Helix 4	AA4	A	361	374	Right-handed alpha
Helix 5	AA5	A	376	385	Right-handed alpha
Helix 6	AA6	A	396	407	Right-handed alpha
Helix 7	AA7	A	411	426	Right-handed alpha
Helix 8	AA8	A	441	445	Right-handed 310
Helix 9	AA9	A	483	488	Right-handed alpha
Helix 10	AB1	A	490	499	Right-handed alpha
Helix 11	AB2	A	500	502	Right-handed 310
Helix 12	AB3	A	552	571	Right-handed alpha
Helix 13	AB4	A	577	590	Right-handed alpha
Helix 14	AB5	A	596	612	Right-handed alpha
Helix 15	AB6	A	614	633	Right-handed alpha
Helix 16	AB7	A	637	657	Right-handed alpha
Helix 17	AB8	A	663	686	Right-handed alpha
Helix 18	AB9	A	689	705	Right-handed alpha
Helix 19	AC1	B	296	303	Right-handed alpha
Helix 20	AC2	B	338	341	Right-handed 310
Helix 21	AC3	B	342	356	Right-handed alpha
Helix 22	AC4	B	361	375	Right-handed alpha
Helix 23	AC5	B	376	385	Right-handed alpha
Helix 24	AC6	B	396	407	Right-handed alpha
Helix 25	AC7	B	411	425	Right-handed alpha
Helix 26	AC8	B	440	445	Right-handed 310
Helix 27	AC9	B	459	461	Right-handed 310
Helix 28	AD1	B	483	488	Right-handed alpha
Helix 29	AD2	B	490	499	Right-handed alpha
Helix 30	AD3	B	500	502	Right-handed 310
Helix 31	AD4	B	552	571	Right-handed alpha
Helix 32	AD5	B	577	589	Right-handed alpha
Helix 33	AD6	B	596	612	Right-handed alpha
Helix 34	AD7	B	614	633	Right-handed alpha
Helix 35	AD8	B	637	657	Right-handed alpha
Helix 36	AD9	B	663	686	Right-handed alpha
Helix 37	AE1	B	689	705	Right-handed alpha
Helix 38	AE2	C	296	302	Right-handed alpha
Helix 39	AE3	C	338	341	Right-handed 310
Helix 40	AE4	C	342	356	Right-handed alpha
Helix 41	AE5	C	361	375	Right-handed alpha
Helix 42	AE6	C	376	385	Right-handed alpha
Helix 43	AE7	C	396	407	Right-handed alpha
Helix 44	AE8	C	411	426	Right-handed alpha
Helix 45	AE9	C	440	445	Right-handed 310
Helix 46	AF1	C	459	461	Right-handed 310
Helix 47	AF2	C	483	488	Right-handed alpha
Helix 48	AF3	C	490	499	Right-handed alpha
Helix 49	AF4	C	500	502	Right-handed 310
Helix 50	AF5	C	552	571	Right-handed alpha
Helix 51	AF6	C	577	590	Right-handed alpha
Helix 52	AF7	C	596	612	Right-handed alpha
Helix 53	AF8	C	614	633	Right-handed alpha
Helix 54	AF9	C	637	657	Right-handed alpha
Helix 55	AG1	C	663	686	Right-handed alpha
Helix 56	AG2	C	689	705	Right-handed alpha
Helix 57	AG3	D	296	303	Right-handed alpha
Helix 58	AG4	D	338	341	Right-handed 310
Helix 59	AG5	D	342	356	Right-handed alpha
Helix 60	AG6	D	361	375	Right-handed alpha
Helix 61	AG7	D	376	385	Right-handed alpha
Helix 62	AG8	D	396	407	Right-handed alpha
Helix 63	AG9	D	411	426	Right-handed alpha
Helix 64	AH1	D	440	445	Right-handed 310
Helix 65	AH2	D	459	461	Right-handed 310
Helix 66	AH3	D	483	488	Right-handed alpha
Helix 67	AH4	D	490	499	Right-handed alpha
Helix 68	AH5	D	500	502	Right-handed 310
Helix 69	AH6	D	552	571	Right-handed alpha
Helix 70	AH7	D	577	590	Right-handed alpha
Helix 71	AH8	D	596	612	Right-handed alpha
Helix 72	AH9	D	614	633	Right-handed alpha
Helix 73	AI1	D	637	657	Right-handed alpha
Helix 74	AI2	D	663	686	Right-handed alpha
Helix 75	AI3	D	689	705	Right-handed alpha

There are 16 sheets in PDB entry 6FND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	307	first strand
Strand 2	C	315	318	anti-parallel
Strand 3	C	476	477	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	447	first strand
Strand 2	A	476	479	parallel
Strand 3	A	315	318	anti-parallel
Strand 4	C	304	307	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	331	first strand
Strand 2	A	463	467	anti-parallel
Strand 3	A	453	457	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	436	438	anti-parallel
Strand 3	A	427	428	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	541	first strand
Strand 2	A	529	535	anti-parallel
Strand 3	A	518	521	anti-parallel
Strand 4	A	592	595	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	D	315	318	anti-parallel
Strand 3	D	476	479	anti-parallel
Strand 4	D	446	447	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	447	first strand
Strand 2	B	476	479	parallel
Strand 3	B	315	318	anti-parallel
Strand 4	D	304	307	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	331	first strand
Strand 2	B	463	467	anti-parallel
Strand 3	B	453	457	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	436	438	anti-parallel
Strand 3	B	426	428	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	541	first strand
Strand 2	B	529	535	anti-parallel
Strand 3	B	518	521	anti-parallel
Strand 4	B	592	595	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	331	first strand
Strand 2	C	463	467	anti-parallel
Strand 3	C	453	457	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	436	438	anti-parallel
Strand 3	C	427	428	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	541	first strand
Strand 2	C	529	535	anti-parallel
Strand 3	C	518	521	anti-parallel
Strand 4	C	592	595	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	331	first strand
Strand 2	D	463	467	anti-parallel
Strand 3	D	453	457	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	335	337	first strand
Strand 2	D	436	438	anti-parallel
Strand 3	D	427	428	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	541	first strand
Strand 2	D	529	535	anti-parallel
Strand 3	D	518	521	anti-parallel
Strand 4	D	592	595	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6FND

Analysis of interatomic Contacts of Structural Units in PDB entry:
6FND