Analysis of interatomic Contacts of Structural Units in PDB entry:
6FNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6FNJ entry

There are 2 chains in PDB entry 6FNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 607ALA 888
B
 ALA 607ALA 888
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6FNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
611 613Right-handed 310
Helix 2
AA2
A
654 669Right-handed alpha
Helix 3
AA3
A
700 708Right-handed alpha
Helix 4
AA4
A
713 734Right-handed alpha
Helix 5
AA5
A
742 744Right-handed 310
Helix 6
AA6
A
783 787Right-handed 310
Helix 7
AA7
A
788 795Right-handed alpha
Helix 8
AA8
A
798 815Right-handed alpha
Helix 9
AA9
A
825 835Right-handed alpha
Helix 10
AB1
A
846 857Right-handed alpha
Helix 11
AB2
A
860 864Right-handed 310
Helix 12
AB3
A
866 880Right-handed alpha
Helix 13
AB4
A
881 885Right-handed 310
Helix 14
AB5
B
611 613Right-handed 310
Helix 15
AB6
B
654 670Right-handed alpha
Helix 16
AB7
B
700 708Right-handed alpha
Helix 17
AB8
B
713 734Right-handed alpha
Helix 18
AB9
B
742 744Right-handed 310
Helix 19
AC1
B
783 787Right-handed 310
Helix 20
AC2
B
788 795Right-handed alpha
Helix 21
AC3
B
798 815Right-handed alpha
Helix 22
AC4
B
825 835Right-handed alpha
Helix 23
AC5
B
846 857Right-handed alpha
Helix 24
AC6
B
860 864Right-handed 310
Helix 25
AC7
B
866 880Right-handed alpha
Helix 26
AC8
B
881 886Right-handed 310
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There are 4 sheets in PDB entry 6FNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 623first strand
Strand 2
A
628 634anti-parallel
Strand 3
A
642 649anti-parallel
Strand 4
A
689 694anti-parallel
Strand 5
A
679 683anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 748first strand
Strand 2
A
754 756anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
615 623first strand
Strand 2
B
628 634anti-parallel
Strand 3
B
642 649anti-parallel
Strand 4
B
689 694anti-parallel
Strand 5
B
679 683anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
746 748first strand
Strand 2
B
754 756anti-parallel
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